(Q33507905)

27 July 2017

title

Inferring the transcriptional landscape of bovine skeletal muscle by integrating co-expression networks (English)

1 reference

27 July 2017

Brian P Dalrymple

5

0 references

author name string

Nicholas J Hudson

1

1 reference

27 July 2017

Antonio Reverter

2

1 reference

27 July 2017

YongHong Wang

3

1 reference

27 July 2017

Paul L Greenwood

4

1 reference

27 July 2017

language of work or name

English

0 references

publication date

1 October 2009

1 reference

27 July 2017

1 reference

27 July 2017

volume

4

1 reference

27 July 2017

issue

10

1 reference

27 July 2017

page(s)

e7249

1 reference

Creative Commons Attribution 4.0 International

27 July 2017

copyright license

start time

1 October 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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21 June 2018

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Weighted gene coexpression network analysis strategies applied to mouse weight

21 June 2018

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Orphan nuclear receptor estrogen-related receptor alpha is essential for adaptive thermogenesis

21 June 2018

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21 June 2018

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21 June 2018

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Redundant roles of Sox17 and Sox18 in postnatal angiogenesis in mice

21 June 2018

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A general framework for weighted gene co-expression network analysis

21 June 2018

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Microarray analysis of PDGFR alpha+ populations in ES cell differentiation culture identifies genes involved in differentiation of mesoderm and mesenchyme including ARID3b that is essential for development of embryonic mesenchymal cells

21 June 2018

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Global and gene-specific analyses show distinct roles for Myod and Myog at a common set of promoters

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Six1 and Eya1 expression can reprogram adult muscle from the slow-twitch phenotype into the fast-twitch phenotype

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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The highly conserved Ndc80 complex is required for kinetochore assembly, chromosome congression, and spindle checkpoint activity

21 June 2018

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Ssdp proteins interact with the LIM-domain-binding protein Ldb1 to regulate development

21 June 2018

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Transcriptional co-activator PGC-1 alpha drives the formation of slow-twitch muscle fibres

21 June 2018

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Mitochondrial transcription factors B1 and B2 activate transcription of human mtDNA

21 June 2018

1 reference

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Single cysteine to tyrosine transition inactivates the growth inhibitory function of Piedmontese myostatin

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749936

Formation of brainstem (nor)adrenergic centers and first-order relay visceral sensory neurons is dependent on homeodomain protein Rnx/Tlx3

21 June 2018

1 reference

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Effects of genetic background on thermoregulation and fatty acid-induced uncoupling of mitochondria in UCP1-deficient mice.

21 June 2018

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Genetic network inference: from co-expression clustering to reverse engineering

21 June 2018

1 reference

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Induction of cell cycle entry and cell death in postmitotic lens fiber cells by overexpression of E2F1 or E2F2

21 June 2018

1 reference

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Human skeletal muscle fibres: molecular and functional diversity

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749936

Targeted disruption of Hoxd9 and Hoxd10 alters locomotor behavior, vertebral identity, and peripheral nervous system development

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749936

Identification of a novel tropomodulin isoform, skeletal tropomodulin, that caps actin filament pointed ends in fast skeletal muscle.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749936

Matrix-dependent Tiam1/Rac signaling in epithelial cells promotes either cell-cell adhesion or cell migration and is regulated by phosphatidylinositol 3-kinase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749936

Inhibition of Stat1-mediated gene activation by PIAS1

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749936

Regulation of skeletal muscle mass in mice by a new TGF-beta superfamily member

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749936

Differential cell cycle effects induced by E2F1 mutants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749936

Structure and function of type II DNA topoisomerases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749936

Embryonic expression of Lim-1, the mouse homolog of Xenopus Xlim-1, suggests a role in lateral mesoderm differentiation and neurogenesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749936

Molecular mechanisms of the expression of cytosolic and mitochondrial isozyme genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749936

Evolution of energy metabolism. Proton permeability of the inner membrane of liver mitochondria is greater in a mammal than in a reptile

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749936

Extracellular proteins that modulate cell-matrix interactions. SPARC, tenascin, and thrombospondin

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749936

Molecular characterization of a rat negative regulator with a basic helix-loop-helix structure predominantly expressed in the developing nervous system

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749936

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21 June 2018

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An amphioxus homeobox gene: sequence conservation, spatial expression during development and insights into vertebrate evolution

21 June 2018

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Evolvability and hierarchy in rewired bacterial gene networks

21 June 2018

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Evolution of eukaryotic transcription circuits

21 January 2018

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Gene co-expression network topology provides a framework for molecular characterization of cellular state

21 January 2018

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Gene expression patterns during intramuscular fat development in cattle.

21 January 2018

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Discerning static and causal interactions in genome-wide reverse engineering problems.

21 January 2018

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Lessons from the DREAM2 Challenges

21 January 2018

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Reverse engineering gene regulatory networks.

21 January 2018

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The transcriptional activation function of the HIF-like factor requires phosphorylation at a conserved threonine

21 January 2018

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MusTRD can regulate postnatal fiber-specific expression.

21 January 2018

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Myosin light chain isoform expression among single mammalian skeletal muscle fibers: species variations

21 January 2018

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Autoregulatory control of E2F1 expression in response to positive and negative regulators of cell cycle progression

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0007249

Lsh is required for meiotic chromosome synapsis and retrotransposon silencing in female germ cells.

21 January 2018

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Cross-talk between MCP-3 and TGFbeta promotes fibroblast collagen biosynthesis.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0007249

Expression of two novel mouse Iroquois homeobox genes during neurogenesis

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0007249

Expression of murine Lhx5 suggests a role in specifying the forebrain

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0007249

Retinoids are produced by glia in the lateral ganglionic eminence and regulate striatal neuron differentiation

21 January 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749936

SHC1, a high pH inducible gene required for growth at alkaline pH in Saccharomyces cerevisiae

31 October 2018

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12 December 2020

Metabolic adaptations to marathon training and racing

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[Effect of Tiam1 overexpression on proliferation and metastatic potential of human colorectal cancer]

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12 December 2020

Gene expression profiling of bovine skeletal muscle in response to and during recovery from chronic and severe undernutrition

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0007249

Identifiers

DOI

1 reference

27 July 2017

0 references

1 reference

27 July 2017

1 reference