(Q33511404)

27 July 2017

title

Genetic identification of nascent peptides that induce ribosome stalling (English)

1 reference

27 July 2017

Douglas R Tanner

1

1 reference

27 July 2017

Daniel A Cariello

2

1 reference

27 July 2017

Christopher J Woolstenhulme

3

1 reference

27 July 2017

Mark A Broadbent

4

1 reference

27 July 2017

Allen R Buskirk

5

1 reference

27 July 2017

language of work or name

English

0 references

publication date

19 October 2009

1 reference

Journal of Biological Chemistry

27 July 2017

published in

1 reference

27 July 2017

volume

284

1 reference

27 July 2017

issue

50

1 reference

27 July 2017

page(s)

34809-34818

1 reference

The plasticity of a translation arrest motif yields insights into nascent polypeptide recognition inside the ribosome tunnel

27 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Slow peptide bond formation by proline and other N-alkylamino acids in translation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Synonymous mutations and ribosome stalling can lead to altered folding pathways and distinct minima

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Site-specific release of nascent chains from ribosomes at a sense codon

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Modulating the activity of the peptidyl transferase center of the ribosome.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Ribosomal features essential for tna operon induction: tryptophan binding at the peptidyl transferase center

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

The tmRNA system for translational surveillance and ribosome rescue.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

A "silent" polymorphism in the MDR1 gene changes substrate specificity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Prolyl-tRNA(Pro) in the A-site of SecM-arrested ribosomes inhibits the recruitment of transfer-messenger RNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Changes produced by bound tryptophan in the ribosome peptidyl transferase center in response to TnaC, a nascent leader peptide

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Genetic analysis of the structure and function of transfer messenger RNA pseudoknot 1.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Protein tagging at rare codons is caused by tmRNA action at the 3' end of nonstop mRNA generated in response to ribosome stalling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

SsrA tagging of Escherichia coli SecM at its translation arrest sequence.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Translocon “Pulling” of Nascent SecM Controls the Duration of Its Translational Pause and Secretion-Responsive secA Regulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Sequences that direct significant levels of frameshifting are frequent in coding regions of Escherichia coli.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Structural insight into the role of the ribosomal tunnel in cellular regulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

The crystal structure of aminoglycoside-3'-phosphotransferase-IIa, an enzyme responsible for antibiotic resistance

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Inhibition of translation termination mediated by an interaction of eukaryotic release factor 1 with a nascent peptidyl-tRNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

The ribosomal exit tunnel functions as a discriminating gate

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Regulatory nascent peptides in the ribosomal tunnel

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Stop codons preceded by rare arginine codons are efficient determinants of SsrA tagging in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

The polypeptide tunnel system in the ribosome and its gating in erythromycin resistance mutants of L4 and L22.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Secretion monitor, SecM, undergoes self-translation arrest in the cytosol

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Upstream open reading frames as regulators of mRNA translation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Reproducing tna operon regulation in vitro in an S-30 system. Tryptophan induction inhibits cleavage of TnaC peptidyl-tRNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

The structural basis of ribosome activity in peptide bond synthesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Regulation of Escherichia coli secA by cellular protein secretion proficiency requires an intact gene X signal sequence and an active translocon

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Ribosome-mediated translational pause and protein domain organization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Ribosome regulation by the nascent peptide

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

The second to last amino acid in the nascent peptide as a codon context determinant.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

The identity of the base following the stop codon determines the efficiency of in vivo translational termination in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Relation between aminoacyl-tRNA stability and the fixed amino acid.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Expression of peptide chain release factor 2 requires high-efficiency frameshift.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787343

Instruction of translating ribosome by nascent peptide

21 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.039040

Features of ribosome-peptidyl-tRNA interactions essential for tryptophan induction of tna operon expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.039040

Proline residues at the C terminus of nascent chains induce SsrA tagging during translation termination

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.039040

Genetically encoded but nonpolypeptide prolyl-tRNA functions in the A site for SecM-mediated ribosomal stall.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.039040

Molecular mechanism of drug-dependent ribosome stalling

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.039040

Signal transduction by DR3, a death domain-containing receptor related to TNFR-1 and CD95

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.039040

Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.039040

Translation arrest requires two-way communication between a nascent polypeptide and the ribosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.039040

Peptidyl-prolyl-tRNA at the ribosomal P-site reacts poorly with puromycin

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.039040

Modulation of the rate of peptidyl transfer on the ribosome by the nature of substrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.039040

Relation between aminoacyl-tRNA stability and the fixed amino acid

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.039040

Ribosome stalling during translation elongation induces cleavage of mRNA being translated in Escherichia coli

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19840930

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/JBC.M109.039040

1 reference

27 July 2017

1 reference

27 July 2017

1 reference