Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q33513747)
Watch
English
Inferring branching pathways in genome-scale metabolic networks
scientific article
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
2791103
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19874610%20AND%20SRC:MED&resulttype=core&format=json
retrieved
11 February 2020
title
Inferring branching pathways in genome-scale metabolic networks
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
2791103
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19874610%20AND%20SRC:MED&resulttype=core&format=json
retrieved
11 February 2020
main subject
metabolic network
1 reference
based on heuristic
inferred from title
author
Esa Pitkänen
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
2791103
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19874610%20AND%20SRC:MED&resulttype=core&format=json
retrieved
11 February 2020
Juho Rousu
series ordinal
3
object named as
Juho Rousu
1 reference
stated in
Europe PubMed Central
PMC publication ID
2791103
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19874610%20AND%20SRC:MED&resulttype=core&format=json
retrieved
11 February 2020
author name string
Paula Jouhten
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
2791103
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19874610%20AND%20SRC:MED&resulttype=core&format=json
retrieved
11 February 2020
publication date
29 October 2009
1 reference
stated in
Europe PubMed Central
PMC publication ID
2791103
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19874610%20AND%20SRC:MED&resulttype=core&format=json
retrieved
11 February 2020
published in
BMC Systems Biology
1 reference
stated in
Europe PubMed Central
PMC publication ID
2791103
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19874610%20AND%20SRC:MED&resulttype=core&format=json
retrieved
11 February 2020
volume
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
2791103
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19874610%20AND%20SRC:MED&resulttype=core&format=json
retrieved
11 February 2020
page(s)
103
1 reference
stated in
Europe PubMed Central
PMC publication ID
2791103
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19874610%20AND%20SRC:MED&resulttype=core&format=json
retrieved
11 February 2020
copyright license
Creative Commons Attribution 2.0 Generic
start time
29 October 2009
1 reference
stated in
April 2022 Public Data File from Crossref
copyright status
copyrighted
1 reference
stated in
April 2022 Public Data File from Crossref
cites work
13C-metabolic flux ratio and novel carbon path analyses confirmed that Trichoderma reesei uses primarily the respirative pathway also on the preferred carbon source glucose
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
Comparative genome-scale metabolic reconstruction and flux balance analysis of multiple Staphylococcus aureus genomes identify novel antimicrobial drug targets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
Reconstruction of biochemical networks in microorganisms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
Towards structured output prediction of enzyme function
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
An introduction to metabolic networks and their structural analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
Large-scale computation of elementary flux modes with bit pattern trees
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
An analytic and systematic framework for estimating metabolic flux ratios from 13C tracer experiments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
A critical examination of stoichiometric and path-finding approaches to metabolic pathways.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
KEGG for linking genomes to life and the environment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
The Universal Protein Resource (UniProt).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
Algorithmic approaches for computing elementary modes in large biochemical reaction networks.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
Metatool 5.0: fast and flexible elementary modes analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
Inferring meaningful pathways in weighted metabolic networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
Metabolic PathFinding: inferring relevant pathways in biochemical networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
Metabolic-flux and network analysis in fourteen hemiascomycetous yeasts
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
Illuminating drug discovery with biological pathways
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
OptStrain: a computational framework for redesign of microbial production systems.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
Genome-scale models of microbial cells: evaluating the consequences of constraints
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
The metabolic world of Escherichia coli is not small
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
The connectivity structure, giant strong component and centrality of metabolic networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
Metabolic network structure determines key aspects of functionality and regulation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
The Pathway Tools software
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
21 June 2018
ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
31 October 2018
Bidirectional reaction steps in metabolic networks: I. Modeling and simulation of carbon isotope labeling experiments.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
31 October 2018
MetaRoute: fast search for relevant metabolic routes for interactive network navigation and visualization
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
31 October 2018
Using atom mapping rules for an improved detection of relevant routes in weighted metabolic networks.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
31 October 2018
Optimization based automated curation of metabolic reconstructions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
31 October 2018
Metabolic pathway analysis web service (Pathway Hunter Tool at CUBIC).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
31 October 2018
Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
31 October 2018
The small world inside large metabolic networks.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
31 October 2018
Pathway analysis in metabolic databases via differential metabolic display (DMD).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
31 October 2018
Metabolic Pathfinding Using RPAIR Annotation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
31 October 2018
Can sugars be produced from fatty acids? A test case for pathway analysis tools
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791103
retrieved
31 October 2018
Nucleic Acids, Purines, Pyrimidines (Nucleotide Synthesis)
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19874610
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Finding theKShortest Loopless Paths in a Network
1 reference
stated in
COCI
retrieved
5 May 2024
reference URL
https://opencitations.net/index/api/v1/references/10.1186/1752-0509-3-103
ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis
1 reference
stated in
COCI
retrieved
5 May 2024
reference URL
https://opencitations.net/index/api/v1/references/10.1186/1752-0509-3-103
Identifiers
DOI
10.1186/1752-0509-3-103
1 reference
stated in
Europe PubMed Central
PMC publication ID
2791103
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19874610%20AND%20SRC:MED&resulttype=core&format=json
retrieved
11 February 2020
DBLP publication ID
journals/bmcsb/PitkanenJR09
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
PMC publication ID
2791103
1 reference
stated in
Europe PubMed Central
PMC publication ID
2791103
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19874610%20AND%20SRC:MED&resulttype=core&format=json
retrieved
11 February 2020
PubMed publication ID
19874610
1 reference
stated in
Europe PubMed Central
PMC publication ID
2791103
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19874610%20AND%20SRC:MED&resulttype=core&format=json
retrieved
11 February 2020
ResearchGate publication ID
38053118
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit