(Q33517118)

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Integrating in silico and in vitro analysis of peptide binding affinity to HLA-Cw*0102: a bioinformatic approach to the prediction of new epitopes

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scholarly article

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Europe PubMed Central

PubMed publication ID

27 July 2017

Integrating in silico and in vitro analysis of peptide binding affinity to HLA-Cw*0102: a bioinformatic approach to the prediction of new epitopes (English)

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Europe PubMed Central

PubMed publication ID

27 July 2017

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Irini Doytchinova

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Irini A Doytchinova

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Persephone Borrow

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Persephone Borrow

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Pierre Pellegrino

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Pierre Pellegrino

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27 July 2017

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Emma L Turnbull

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27 July 2017

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Valerie A Walshe

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27 July 2017

Channa K Hattotuwagama

2

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27 July 2017

Mailee Wong

4

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27 July 2017

Isabel K Macdonald

5

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27 July 2017

Arend Mulder

6

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27 July 2017

Frans H J Claas

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27 July 2017

Jo Turner

9

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27 July 2017

Ian Williams

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27 July 2017

Darren R Flower

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27 July 2017

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publication date

30 November 2009

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27 July 2017

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27 July 2017

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27 July 2017

11

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27 July 2017

e8095

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Europe PubMed Central

PubMed publication ID

27 July 2017

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Creative Commons Attribution 4.0 International

30 November 2009

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April 2022 Public Data File from Crossref

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Development and functional properties of thymic and extrathymic T lymphocytes.

1 reference

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Reciprocal recognition of an HLA-Cw4-restricted HIV-1 gp120 epitope by CD8+ T cells and NK cells

1 reference

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NetMHCpan, a method for MHC class I binding prediction beyond humans

1 reference

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Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods

1 reference

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1 reference

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Impact of MHC class I diversity on immune control of immunodeficiency virus replication

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NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11

1 reference

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1 reference

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In silico characterization of immunogenic epitopes presented by HLA-Cw*0401

1 reference

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Selection on the human immunodeficiency virus type 1 proteome following primary infection

1 reference

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Immunoinformatics comes of age

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The killer immunoglobulin-like receptor gene cluster: tuning the genome for defense

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Evolutionary dynamics of HIV-1 and the control of AIDS.

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Statistical deconvolution of enthalpic energetic contributions to MHC-peptide binding affinity

1 reference

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EpiJen: a server for multistep T cell epitope prediction

1 reference

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AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data

1 reference

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Natural killer cell immune responses

1 reference

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14 July 2018

Quantitative structure-activity relationships and the prediction of MHC supermotifs

1 reference

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14 July 2018

Genetics of the central MHC.

1 reference

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Identifiying human MHC supertypes using bioinformatic methods.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779488

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MHCPred: A server for quantitative prediction of peptide-MHC binding.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779488

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A structural perspective on MHC class I recognition by killer cell immunoglobulin-like receptors

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JenPep: a database of quantitative functional peptide data for immunology

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Natural killer cell recognition of HLA class I molecules.

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Substantial differences in specificity of HIV-specific cytotoxic T cells in acute and chronic HIV infection

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An assay for peptide binding to HLA-Cw*0102.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2779488

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A human monoclonal antibody against HLA-Cw1 and a human monoclonal antibody against an HLA-A locus determinant derived from a single uniparous female

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The inter-locus recombinant HLA-B*4601 has high selectivity in peptide binding and functions characteristic of HLA-C

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Genetic algorithms in molecular recognition and design

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Structural analysis of MHC class I molecules with bound peptide antigens

1 reference

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Prominent role of secondary anchor residues in peptide binding to HLA-A2.1 molecules

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Class I T-cell epitope prediction: improvements using a combination of proteasome cleavage, TAP affinity, and MHC binding.

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Molecular basis of peptide recognition by the TCR: affinity differences calculated using large scale computing.

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Dominant influence of HLA-B in mediating the potential co-evolution of HIV and HLA.

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1 reference

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12 December 2020

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A critical cross-validation of high throughput structural binding prediction methods for pMHC

1 reference

https://pubmed.ncbi.nlm.nih.gov/19956609

12 December 2020

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inferred from PubMed ID database lookup

Toward the Quantitative Prediction of T-Cell Epitopes: CoMFA and CoMSIA Studies of Peptides with Affinity for the Class I MHC Molecule HLA-A*0201

1 reference

https://pubmed.ncbi.nlm.nih.gov/19956609

12 December 2020

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inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/19956609

12 December 2020

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inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/19956609

12 December 2020

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inferred from PubMed ID database lookup

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10.1371/JOURNAL.PONE.0008095

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Europe PubMed Central

PubMed publication ID

27 July 2017

2009PLoSO...4.8095W

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release_munp3gddxbahjiibwaugnctq4m

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24 November 2022

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PMC publication ID

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Europe PubMed Central

PubMed publication ID

27 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

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27 July 2017

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