(Q33518415)

27 July 2017

title

Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis (English)

1 reference

27 July 2017

0 references

Noelle M Griffin

1

1 reference

27 July 2017

Jingyi Yu

2

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27 July 2017

Fred Long

3

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27 July 2017

Phil Oh

4

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27 July 2017

Sabrina Shore

5

1 reference

27 July 2017

Yan Li

6

1 reference

27 July 2017

Jim A Koziol

7

1 reference

27 July 2017

Jan E Schnitzer

8

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27 July 2017

publication date

13 December 2009

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27 July 2017

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27 July 2017

volume

28

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27 July 2017

issue

1

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27 July 2017

page(s)

83-89

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Enhancing identifications of lipid-embedded proteins by mass spectrometry for improved mapping of endothelial plasma membranes in vivo

27 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Significance analysis of spectral count data in label-free shotgun proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Live dynamic imaging of caveolae pumping targeted antibody rapidly and specifically across endothelium in the lung

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Systematic uncovering of multiple pathways underlying the pathology of Huntington disease by an acid-cleavable isotope-coded affinity tag approach

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Informatics-assisted protein profiling in a transgenic mouse model of amyotrophic lateral sclerosis.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Quantitative proteomic analysis of myc-induced apoptosis: a direct role for Myc induction of the mitochondrial chloride ion channel, mtCLIC/CLIC4

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Statistical modeling of sequencing errors in SAGE libraries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Subtractive proteomic mapping of the endothelial surface in lung and solid tumours for tissue-specific therapy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Quantification of C-reactive protein in the serum of patients with rheumatoid arthritis using multiple reaction monitoring mass spectrometry and 13C-labeled peptide standards

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Protocols for disease classification from mass spectrometry data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

A comprehensive approach to the analysis of matrix-assisted laser desorption/ionization-time of flight proteomics spectra from serum samples

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Quantitative proteomic analysis of Myc oncoprotein function

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Large-scale proteomic analysis of the human spliceosome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Statistical methods for assessing agreement between two methods of clinical measurement

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Quantitative Proteomic Comparison of Rat Mitochondria from Muscle, Heart, and Liver

21 June 2018

1 reference

Application of capture-recapture models to estimation of protein count in MudPIT experiments

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Quantifying reproducibility for differential proteomics: noise analysis for protein liquid chromatography-mass spectrometry of human serum.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Quantification of steroid hormones with pheromonal properties in municipal wastewater effluent

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2805705

Proteomics. Proteomics ponders prime time

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20010810

12 December 2020

inferred from PubMed ID database lookup

Proteomics. Will biomarkers take off at last?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20010810

12 December 2020

inferred from PubMed ID database lookup

Some selected quick and easy methods of statistical analysis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20010810

12 December 2020

inferred from PubMed ID database lookup

Evaluation of strong cation exchange versus isoelectric focusing of peptides for multidimensional liquid chromatography-tandem mass spectrometry

1 reference

7 January 2021

Multidimensional protein identification technology (MudPIT): technical overview of a profiling method optimized for the comprehensive proteomic investigation of normal and diseased heart tissue

1 reference

7 January 2021

Separation of caveolae from associated microdomains of GPI-anchored proteins

1 reference

7 January 2021

Direct Clustering of a Data Matrix

1 reference

7 January 2021

Identifiers

DOI

10.1038/NBT.1592

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Dimensions Publication ID

27 July 2017

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27 July 2017

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