(Q33519466)

27 July 2017

title

DtaRefinery, a software tool for elimination of systematic errors from parent ion mass measurements in tandem mass spectra data sets (English)

1 reference

27 July 2017

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Vladislav A Petyuk

1

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Samuel Owen Purvine

object named as

Samuel O Purvine

5

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Richard D. Smith

object named as

Richard D Smith

8

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author name string

Anoop M Mayampurath

2

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27 July 2017

Matthew E Monroe

3

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27 July 2017

Ashoka D Polpitiya

4

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27 July 2017

Gordon A Anderson

6

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27 July 2017

David G Camp

7

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27 July 2017

publication date

17 December 2009

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Molecular & Cellular Proteomics

27 July 2017

published in

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27 July 2017

volume

9

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27 July 2017

issue

3

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27 July 2017

page(s)

486-496

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Solid tumor proteome and phosphoproteome analysis by high resolution mass spectrometry

27 July 2017

cites work

1 reference

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Data Self-Recalibration and Mixture Mass Fingerprint Searching (DASER-MMF) to enhance protein identification within complex mixtures

14 July 2018

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Detection of co-eluted peptides using database search methods

14 July 2018

1 reference

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DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra

14 July 2018

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Postexperiment monoisotopic mass filtering and refinement (PE-MMR) of tandem mass spectrometric data increases accuracy of peptide identification in LC/MS/MS.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2849711

Elimination of systematic mass measurement errors in liquid chromatography-mass spectrometry based proteomics using regression models and a priori partial knowledge of the sample content

14 July 2018

1 reference

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Mass measurement accuracy in analyses of highly complex mixtures based upon multidimensional recalibration

14 July 2018

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On the proper use of mass accuracy in proteomics.

14 July 2018

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ProteomeCommons.org IO Framework: reading and writing multiple proteomics data formats

14 July 2018

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Characterization of the mouse brain proteome using global proteomic analysis complemented with cysteinyl-peptide enrichment

14 July 2018

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Multicomponent internal recalibration of an LC-FTICR-MS analysis employing a partially characterized complex peptide mixture: systematic and random errors

14 July 2018

1 reference

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Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap

14 July 2018

1 reference

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Mass spectrometry of peptides and proteins

14 July 2018

1 reference

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Open mass spectrometry search algorithm

14 July 2018

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A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes

14 July 2018

1 reference

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Probability-based protein identification by searching sequence databases using mass spectrometry data

14 July 2018

1 reference

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Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing MS or MS/MS and database searching.

14 July 2018

1 reference

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Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database

14 July 2018

1 reference

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InsPecT: identification of posttranslationally modified peptides from tandem mass spectra

14 July 2018

1 reference

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A New Algorithm for the Evaluation of Shotgun Peptide Sequencing in Proteomics: Support Vector Machine Classification of Peptide MS/MS Spectra and SEQUEST Scores

21 January 2018

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Trypsin cleaves exclusively C-terminal to arginine and lysine residues

21 January 2018

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Automated gain control and internal calibration with external ion accumulation capillary liquid chromatography-electrospray ionization Fourier transform ion cyclotron resonance

21 January 2018

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Improved precision and accuracy for high-performance liquid chromatography/Fourier transform ion cyclotron resonance mass spectrometric exact mass measurement of small molecules from the simultaneous and controlled introduction of internal calibrant

21 January 2018

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Optimization and use of peptide mass measurement accuracy in shotgun proteomics.

21 January 2018

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Computational principles of determining and improving mass precision and accuracy for proteome measurements in an Orbitrap.

21 January 2018

1 reference

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Nonparametric mass calibration using hundreds of internal calibrants

21 January 2018

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Automatic internal calibration in liquid chromatography/Fourier transform ion cyclotron resonance mass spectrometry of protein digests.

21 January 2018

1 reference

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Mass measurement errors of Fourier-transform mass spectrometry (FTMS): distribution, recalibration, and application

21 January 2018

1 reference

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Projection Pursuit Regression

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M900217-MCP200

VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.

21 January 2018

1 reference

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Large-scale identification and evolution indexing of tyrosine phosphorylation sites from murine brain

21 January 2018

1 reference

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Robust Locally Weighted Regression and Smoothing Scatterplots

21 January 2018

1 reference

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10.1074/MCP.M900217-MCP200

21 January 2018

Identifiers

DOI

1 reference

27 July 2017

1 reference

27 July 2017

1 reference