(Q33521289)

27 July 2017

The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity (English)

1 reference

27 July 2017

Bifidobacterium dentium

Bifidobacterium dentium

1 reference

1 reference

Fei He

9

0 references

Marcus J Claesson

Marcus J Claesson

8

0 references

Carlos Canchaya

Carlos Canchaya

7

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Francesca Turroni

Francesca Turroni

2

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Alberto Ferrarini

Alberto Ferrarini

12

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Francesca Bottacini

Francesca Bottacini

6

0 references

Aldert Zomer

Aldert Zomer

3

0 references

Ziding Zhang

Ziding Zhang

19

0 references

Marco Ventura

Marco Ventura

1

0 references

Paul W O'Toole

Paul W O'Toole

22

0 references

Marco R. Oggioni

Marco Oggioni

17

0 references

Bernard Henrissat

15

Bernard Henrissat

1 reference

27 July 2017

23

Douwe van Sinderen

1 reference

27 July 2017

Elena Foroni

4

1 reference

27 July 2017

Vanessa Giubellini

5

1 reference

27 July 2017

Maria Mantzourani

10

1 reference

27 July 2017

Laura Mulas

11

1 reference

27 July 2017

Beile Gao

13

1 reference

27 July 2017

Massimo Delledonne

14

1 reference

27 July 2017

Pedro Coutinho

16

1 reference

27 July 2017

Radhey S Gupta

18

1 reference

27 July 2017

David Beighton

20

1 reference

27 July 2017

Gerald F Fitzgerald

21

1 reference

27 July 2017

24 December 2009

1 reference

27 July 2017

1 reference

27 July 2017

5

1 reference

27 July 2017

12

1 reference

27 July 2017

e1000785

1 reference

Creative Commons Attribution 4.0 International

27 July 2017

start time

24 December 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

MUMmer

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Differences in genome content among Helicobacter pylori isolates from patients with gastritis, duodenal ulcer, or gastric cancer reveal novel disease-associated genes

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Association between Bifidobacteriaceae and the clinical severity of root caries lesions

21 June 2018

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The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome

21 June 2018

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21 June 2018

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Genome sequence of the probiotic bacterium Bifidobacterium animalis subsp. lactis AD011.

21 June 2018

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Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth

21 June 2018

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Bacteria of dental caries in primary and permanent teeth in children and young adults

21 June 2018

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Protein translocation across the bacterial cytoplasmic membrane.

21 June 2018

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Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum

21 June 2018

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CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

21 June 2018

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Genome of the opportunistic pathogen Streptococcus sanguinis

21 June 2018

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21 June 2018

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Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria.

21 June 2018

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Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility

21 June 2018

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Detecting recombination in evolving nucleotide sequences

21 June 2018

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Sequence analyses of fimbriae subunit FimA proteins on Actinomyces naeslundii genospecies 1 and 2 and Actinomyces odontolyticus with variant carbohydrate binding specificities

21 June 2018

1 reference

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A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action

21 June 2018

1 reference

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Towards understanding molecular modes of probiotic action

21 June 2018

1 reference

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A pneumococcal pilus influences virulence and host inflammatory responses

21 June 2018

1 reference

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Adherence molecules of pathogenic pneumococci

21 June 2018

1 reference

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Human antimicrobial peptides: defensins, cathelicidins and histatins

21 June 2018

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The complex oral microflora of high-risk individuals and groups and its role in the caries process

21 June 2018

1 reference

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Getting better with bifidobacteria

21 June 2018

1 reference

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Molecular analysis of human oral microbiota.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Host-bacterial mutualism in the human intestine

21 June 2018

1 reference

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Selection-driven transcriptome polymorphism in Escherichia coli/Shigella species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Escherichia coli glutamate- and arginine-dependent acid resistance systems increase internal pH and reverse transmembrane potential

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Whole-genome prokaryotic phylogeny

21 June 2018

1 reference

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Bifidobacterium lactis DSM 10140: identification of the atp (atpBEFHAGDC) operon and analysis of its genetic structure, characteristics, and phylogeny

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Platelet aggregation induced by serotype polysaccharides from Streptococcus mutans.

21 June 2018

1 reference

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Comparison of Campylobacter jejuni isolates implicated in Guillain-Barré syndrome and strains that cause enteritis by a DNA microarray

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Analysis of loci required for determination of serotype antigenicity in Streptococcus mutans and its clinical utilization

21 June 2018

1 reference

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A Genomic View of the Human-Bacteroides thetaiotaomicron Symbiosis

21 June 2018

1 reference

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Analysis of genome plasticity in pathogenic and commensal Escherichia coli isolates by use of DNA arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Gut flora in health and disease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Probiotics: an overview of beneficial effects.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Invasion of dentinal tubules by oral bacteria.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Evolutionary genomics of Salmonella: gene acquisitions revealed by microarray analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Identification of genes that are associated with DNA repeats in prokaryotes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Molecular analysis of bacterial species associated with childhood caries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

The Fap1 fimbrial adhesin is a glycoprotein: antibodies specific for the glycan moiety block the adhesion of Streptococcus parasanguis in an in vitro tooth model

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Identification of independent Streptococcus gordonii SspA and SspB functions in coaggregation with Actinomyces naeslundii

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Genetics of acid adaptation in oral streptococci

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Actinomyces naeslundii fimbrial protein Orf977 shows similarity to a streptococcal adhesin

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Evolutionary genomics of Staphylococcus aureus: insights into the origin of methicillin-resistant strains and the toxic shock syndrome epidemic

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Evidence for symmetric chromosomal inversions around the replication origin in bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Molecular analysis of commensal host-microbial relationships in the intestine

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Comparative phage genomics and the evolution of Siphoviridae: insights from dairy phages

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Characterization of heat, oxidative, and acid stress responses in Brucella melitensis.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Role of serotype-specific polysaccharide in the resistance of Streptococcus mutans to phagocytosis by human polymorphonuclear leukocytes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

21 June 2018

The Staden package, 1998

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

A novel gene required for rhamnose-glucose polysaccharide synthesis in Streptococcus mutans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

In vitro models that support adhesion specificity in biofilms of oral bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Base-calling of automated sequencer traces using phred. II. Error probabilities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

The complete genome sequence of the gram-positive bacterium Bacillus subtilis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Structure, function and immunogenicity of streptococcal antigen I/II polypeptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Salivary mucins in oral mucosal defense

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Inactivation of the gene encoding surface protein SspA in Streptococcus gordonii DL1 affects cell interactions with human salivary agglutinin and oral actinomyces.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Microbial ecology of dental plaque and its significance in health and disease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Specific inhibition of adsorption of Actinomyces viscosus T14V to saliva-treated hydroxyapatite by antibody against type 1 fimbriae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Tooth surface-pellicle lipids and their role in the protection of dental enamel against lactic-acid diffusion in man.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Human salivary acidic proline-rich proteins and statherin promote the attachment of Actinomyces viscosus LY7 to apatitic surfaces

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Primary sequence of the Escherichia coli fadL gene encoding an outer membrane protein required for long-chain fatty acid transport

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Proteolytic activity of Streptococcus mutans (GS-5)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Differential Utilization of Proteins in Saliva from Caries-active and Caries-free Subjects as Growth Substrates by Plaque-forming Streptococci

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Mechanisms of action of probiotics in intestinal diseases.

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Gram-positive rods prevailing in teeth with apical periodontitis undergoing root canal treatment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Bifidobacterium catenulatum, Bifidobacterium dentium, and Bifidobacterium angulatum: Three New Species and Their Deoxyribonucleic Acid Homology Relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria and mitochondria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Analysis of bifidobacterial evolution using a multilocus approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Proteome analysis of Streptococcus mutans metabolic phenotype during acid tolerance

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Tandem genes encode cell-surface polypeptides SspA and SspB which mediate adhesion of the oral bacterium Streptococcus gordonii to human and bacterial receptors.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Molecular and clinical analyses of the gene encoding the collagen-binding adhesin of Streptococcus mutans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Altered adherence properties of a Streptococcus gordonii hppA (oligopeptide permease) mutant result from transcriptional effects on cshA adhesin gene expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Occurrence of the family bifidobacteriaceae in human dental caries and plaque

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Diversity of the genus Lactobacillus revealed by comparative genomics of five species

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Comparative analysis of CRISPR loci in lactic acid bacteria genomes.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Dental caries: risk assessment and treatment solutions for an elderly population

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

The IUBMB-Endorsed Transporter Classification System

31 October 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Substituted-cysteine accessibility method

21 January 2018

1 reference

12 December 2020

Solution structure and dynamics of LuxU from Vibrio harveyi, a phosphotransferase protein involved in bacterial quorum sensing

1 reference

12 December 2020

Predominant obligate anaerobes in human carious dentin

1 reference

12 December 2020

The final pH of bacteria comprising the predominant flora on sound and carious human root and enamel surfaces

1 reference

12 December 2020

The isolation of bifidobacteria from occlusal carious lesions in children and adults

1 reference

12 December 2020

The broad diversity of neutral and sialylated oligosaccharides derived from human salivary mucins

1 reference

12 December 2020

Characterization of the functional replication origin of Mycobacterium tuberculosis

1 reference

12 December 2020

Factors determining the degree of anaerobiosis of Bifidobacterium strains

1 reference

12 December 2020

Acid-induced acid tolerance and acidogenicity of non-mutans streptococci

1 reference

12 December 2020

The microbiota of young children from tooth and tongue samples

1 reference

12 December 2020

Measurement of pH in human dental plaque in vivo with an ion-sensitive transistor electrode

1 reference

12 December 2020

Distribution of salivary Lactobacillus and Bifidobacterium species in periodontal health and disease

1 reference

12 December 2020

10.1371/JOURNAL.PGEN.1000785

Identifiers

DOI

1 reference

27 July 2017

1 reference

27 July 2017

1 reference