(Q33535898)

27 July 2017

title

Structure, function, and evolution of the Thiomonas spp. genome (English)

1 reference

27 July 2017

33

0 references

Claudine Médigue

34

Claudine Médigue

0 references

Florence Arsène-Ploetze

1

Florence Arsène-Ploetze

0 references

Jessica Cleiss-Arnold

13

Jessica Cleiss-Arnold

0 references

Audrey Heinrich-Salmeron

16

Audrey Heinrich-Salmeron

0 references

Céline Brochier-Armanet

7

Fabienne Battaglia-Brunet

Céline Brochier-Armanet

0 references

10

Fabienne Battaglia-Brunet

0 references

Didier Lièvremont

21

Didier Lièvremont

0 references

Valérie Barbe

9

Valérie Barbe

0 references

Catherine Joulian

18

Catherine Joulian

1 reference

27 July 2017

25

Caroline Proux

1 reference

27 July 2017

2

Sandrine Koechler

1 reference

27 July 2017

Florence Hommais

17

0 references

Odile Bruneel

Odile Bruneel

11

0 references

Daniel Muller

Daniel Muller

23

0 references

Philippe Ortet

Philippe Ortet

24

0 references

Michael Chandler

Michael Chandler

5

0 references

Philippe N Bertin

35

Philippe N Bertin

1 reference

27 July 2017

14

Stéphane Cruveiller

1 reference

27 July 2017

31

Emmanuel Talla

1 reference

27 July 2017

6

Violaine Bonnefoy

1 reference

27 July 2017

19

Evelyne Krin

1 reference

27 July 2017

20

Aurélie Lieutaud

1 reference

27 July 2017

28

Zoé Rouy

1 reference

27 July 2017

29

Grégory Salvignol

1 reference

27 July 2017

Marie Marchal

3

1 reference

27 July 2017

Jean-Yves Coppée

4

1 reference

27 July 2017

Mohamed Barakat

8

1 reference

27 July 2017

Christopher G Bryan

12

1 reference

27 July 2017

Mathieu Erhardt

15

1 reference

27 July 2017

Caroline Michel

22

1 reference

27 July 2017

Patricia Siguier

26

1 reference

27 July 2017

David Roche

27

1 reference

27 July 2017

Djamila Slyemi

30

1 reference

27 July 2017

Stéphanie Weiss

32

1 reference

27 July 2017

publication date

26 February 2010

1 reference

27 July 2017

1 reference

27 July 2017

volume

6

1 reference

27 July 2017

issue

2

1 reference

27 July 2017

page(s)

e1000859

1 reference

Creative Commons Attribution 4.0 International

27 July 2017

copyright license

start time

26 February 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Studies on the spectrophotometric determination of DNA hybridization from renaturation rates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Structural and mechanistic determinants of c-di-GMP signalling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Run-off replication of host-adaptability genes is associated with gene transfer agents in the genome of mouse-infecting Bartonella grahamii

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Cytoplasmic pH measurement and homeostasis in bacteria and archaea

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Carbon and arsenic metabolism in Thiomonas strains: differences revealed diverse adaptation processes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Genesis, effects and fates of repeats in prokaryotic genomes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Principles of c-di-GMP signalling in bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Genomic islands: tools of bacterial horizontal gene transfer and evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Comparative genomics: the bacterial pan-genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Sulfur metabolism in phototrophic sulfur bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Type IV secretion systems: tools of bacterial horizontal gene transfer and virulence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Microbial diversity and the genetic nature of microbial species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Efficient phage-mediated pigment biosynthesis in oceanic cyanobacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Patterns and implications of gene gain and loss in the evolution of Prochlorococcus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Multimetal resistance and tolerance in microbial biofilms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

A tale of two oxidation states: bacterial colonization of arsenic-rich environments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Life in acid: pH homeostasis in acidophiles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

A horizontally acquired filamentous phage contributes to the pathogenicity of the plague bacillus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Bacillus subtilis genome diversity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Ten years of bacterial genome sequencing: comparative-genomics-based discoveries.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Genomic islands and the ecology and evolution of Prochlorococcus.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

MaGe: a microbial genome annotation system supported by synteny results

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Natural transformation of Neisseria gonorrhoeae: from DNA donation to homologous recombination

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Oxidation of arsenite by Thiomonas strains and characterization of Thiomonas arsenivorans sp. nov.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

21 June 2018

The microbial pan-genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

A bacterial view of the periodic table: genes and proteins for toxic inorganic ions.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Prokaryotic sulfur oxidation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Horizontal transfer of the high-pathogenicity island of Yersinia pseudotuberculosis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Genes and enzymes involved in bacterial oxidation and reduction of inorganic arsenic

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Circular binary segmentation for the analysis of array-based DNA copy number data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Shaping bacterial genomes with integrative and conjugative elements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Extensive genomic diversity in pathogenic Escherichia coli and Shigella Strains revealed by comparative genomic hybridization microarray

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

As(III) and Sb(III) uptake by GlpF and efflux by ArsB in Escherichia coli.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Modulation of DNA repair processes by arsenic and selenium compounds

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

The microbiology of acidic mine waters

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Operon mer: bacterial resistance to mercury and potential for bioremediation of contaminated environments.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Unusual integrase gene expression on the clc genomic island in Pseudomonas sp. strain B13.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Comparative genomic analyses of the vibrio pathogenicity island and cholera toxin prophage regions in nonepidemic serogroup strains of Vibrio cholerae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Use and misuse of correspondence analysis in codon usage studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

An arsenic(III)-oxidizing bacterial population: selection, characterization, and performance in reactors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

A new non-linear normalization method for reducing variability in DNA microarray experiments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Acid survival of Helicobacter pylori: how does urease activity trigger cytoplasmic pH homeostasis?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Life in extreme environments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Pathogenicity islands and the evolution of microbes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

DbClustal: rapid and reliable global multiple alignments of protein sequences detected by database searches

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Phylogeny of Thiobacillus cuprinus and other mixotrophic thiobacilli: proposal for Thiomonas gen. nov.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

The Quantitative Measurement of DNA Hybridization from Renaturation Rates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Phenotypic switching of Thiobacillus ferrooxidans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Microbiology of a wetland ecosystem constructed to remediate mine drainage from a heavy metal mine

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000859

Mediation of arsenic oxidation by Thiomonas sp. in acid-mine drainage (Carnoulès, France).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000859

Confirmation of Thiomonas delicata (formerly Thiobacillus delicatus) as a distinct species of the genus Thiomonas Moreira and Amils 1997 with comments on some species currently assigned to the genus

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000859

Bacterial immobilization and oxidation of arsenic in acid mine drainage (Carnoulès creek, France).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000859

Role of staphylococcal phage and SaPI integrase in intra- and interspecies SaPI transfer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000859

A biological role for prokaryotic ClC chloride channels

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000859

Induction of oxidative DNA damage by arsenite and its trivalent and pentavalent methylated metabolites in cultured human cells and isolated DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000859

Report of the Ad Hoc Committee on Reconciliation of Approaches to Bacterial Systematics

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000859

Arsenite oxidation by a chemoautotrophic moderately acidophilic Thiomonas sp.: from the strain isolation to the gene study

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2829063

Homologous recombination in Agrobacterium: potential implications for the genomic species concept in bacteria

31 October 2018

1 reference

12 December 2020

Thiobacillus perometabolis nov. sp., a non-autotrophic thiobacillus

1 reference

12 December 2020

Phage-mediated intergeneric transfer of toxin genes

1 reference

12 December 2020

Sequencing the species pan-genome

1 reference

12 December 2020

Potential photosynthesis gene recombination between Prochlorococcus and Synechococcus via viral intermediates

1 reference

12 December 2020

10.1371/JOURNAL.PGEN.1000859

Identifiers

DOI

1 reference

27 July 2017

1 reference

27 July 2017

1 reference