(Q33538882)

27 July 2017

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title

XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments (English)

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27 July 2017

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14

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27 July 2017

13

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Damian Smedley

12

Damian Smedley

1 reference

27 July 2017

Gonzalo Vera

6

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Danny Arends

Danny Arends

5

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John M. Hancock

John M Hancock

11

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Andrew Jones

Andrew R Jones

16

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Klaus Schughart

Klaus Schughart

10

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Helen Parkinson

Helen E Parkinson

17

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Morris A Swertz

1

Morris A Swertz

1 reference

27 July 2017

author name string

K Joeri van der Velde

2

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27 July 2017

Bruno M Tesson

3

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27 July 2017

Richard A Scheltema

4

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27 July 2017

Rudi Alberts

7

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27 July 2017

Martijn Dijkstra

8

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27 July 2017

Paul Schofield

9

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27 July 2017

Engbert O de Brock

15

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27 July 2017

Coordination of Mouse Informatics Resources (CASIMIR)

18

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27 July 2017

Genotype-To-Phenotype (GEN2PHEN) Consortiums

19

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27 July 2017

Ritsert C Jansen

20

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27 July 2017

publication date

9 March 2010

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27 July 2017

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27 July 2017

volume

11

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27 July 2017

issue

3

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27 July 2017

page(s)

R27

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describes a project that uses

27 July 2017

SQL

1 reference

26 June 2022

https://europepmc.org/article/PMC/PMC2864567

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1186/gb-2010-11-3-r27

0 references

cites work

BioMart--biological queries made easy

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Identification of quantitative trait loci for locomotor activation and anxiety using closely related inbred strains

21 June 2018

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Complex nature of SNP genotype effects on gene expression in primary human leucocytes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

Solutions for data integration in functional genomics: a critical assessment and case study

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

Genotype-phenotype databases: challenges and solutions for the post-genomic era.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

Nucleic Acids Research annual Database Issue and the NAR online Molecular Biology Database Collection in 2009.

21 June 2018

1 reference

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Generalizing genetical genomics: getting added value from environmental perturbation

21 June 2018

1 reference

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Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges

21 June 2018

1 reference

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Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project

21 June 2018

1 reference

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GMODWeb: a web framework for the Generic Model Organism Database.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

Data capture in bioinformatics: requirements and experiences with Pedro

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

Genetic basis of proteome variation in yeast

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

The NCBI dbGaP database of genotypes and phenotypes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

A genome-wide association study of global gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

Population genomics of human gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

The PhenoGen informatics website: tools for analyses of complex traits

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

A Chado case study: an ontology-based modular schema for representing genome-associated biological information

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

FlyMine: an integrated database for Drosophila and Anopheles genomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

Beyond standardization: dynamic software infrastructures for systems biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

Relative impact of nucleotide and copy number variation on gene expression phenotypes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

Regulatory network construction in Arabidopsis by using genome-wide gene expression quantitative trait loci.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

Mapping determinants of gene expression plasticity by genetical genomics in C. elegans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

GGtools: analysis of genetics of gene expression in bioconductor.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

PlantQTL-GE: a database system for identifying candidate genes in rice and Arabidopsis by gene expression and QTL information

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

AnimalQTLdb: a livestock QTL database tool set for positional QTL information mining and beyond.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

Standards for systems biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

Taverna: a tool for building and running workflows of services

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

Genetical genomics: combining genetics with gene expression analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

An analysis of extensible modelling for functional genomics data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

The immune epitope database and analysis resource: from vision to blueprint

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

The MIPS mammalian protein-protein interaction database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

Bioconductor: open software development for computational biology and bioinformatics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

Molecular Genetics Information System (MOLGENIS): alternatives in developing local experimental genomics databases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

R/qtl: QTL mapping in experimental crosses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

The generic genome browser: a building block for a model organism system database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

Genetic dissection of transcriptional regulation in budding yeast

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

Genetical genomics: the added value from segregation.

21 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2010-11-3-R27

Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2010-11-3-R27

affyGG: computational protocols for genetical genomics with Affymetrix arrays.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2010-11-3-R27

EMPReSS: standardized phenotype screens for functional annotation of the mouse genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2010-11-3-R27

System-wide molecular evidence for phenotypic buffering in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2010-11-3-R27

The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics

21 January 2018

2 references

https://api.crossref.org/works/10.1186%2FGB-2010-11-3-R27

21 January 2018

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

A survey of genetic human cortical gene expression

31 October 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2010-11-3-R27

MetaNetwork: a computational protocol for the genetic study of metabolic networks

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864567

The genetics of plant metabolism

31 October 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2010-11-3-R27

Pinpointing expression differences

21 January 2018

1 reference

12 December 2020

Quantitative trait loci for bone density in C57BL/6J and CAST/EiJ inbred mice

1 reference

12 December 2020

Classical genetics goes high-tech

1 reference

12 December 2020

Discovery of expression QTLs using large-scale transcriptional profiling in human lymphocytes

1 reference

12 December 2020

Identifiers

DOI

10.1186/GB-2010-11-3-R27

1 reference

Dimensions Publication ID

27 July 2017

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1 reference

27 July 2017

1 reference