(Q33566352)

28 July 2017

Differential abundance analysis for microbial marker-gene surveys (English)

1 reference

28 July 2017

4

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28 July 2017

Héctor Corrada Bravo

3

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author name string

Joseph N Paulson

series ordinal

1

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28 July 2017

O Colin Stine

series ordinal

2

1 reference

28 July 2017

29 September 2013

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28 July 2017

3

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inferred from page(s)

published in

Nature Methods

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28 July 2017

10

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28 July 2017

12

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28 July 2017

1200-1202

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describes a project that uses

28 July 2017

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/4010126

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1038/nmeth.2658

0 references

cites work

Inferring correlation networks from genomic survey data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

Microbial co-occurrence relationships in the human microbiome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

A framework for human microbiome research

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

Periodontal disease and the oral microbiota in new-onset rheumatoid arthritis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

ReCount: a multi-experiment resource of analysis-ready RNA-seq gene count datasets

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

DNACLUST: accurate and efficient clustering of phylogenetic marker genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

Metagenomic biomarker discovery and explanation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

Topographical continuity of bacterial populations in the healthy human respiratory tract

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

Differential expression analysis for sequence count data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

Cloud-scale RNA-sequencing differential expression analysis with Myrna

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

Vaginal microbiome of reproductive-age women

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

QIIME allows analysis of high-throughput community sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

Alignment and clustering of phylogenetic markers--implications for microbial diversity studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

Comparisons of subgingival microbial profiles of refractory periodontitis, severe periodontitis, and periodontal health using the human oral microbe identification microarray

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

Statistical methods for detecting differentially abundant features in clinical metagenomic samples

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

A core gut microbiome in obese and lean twins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

An application of statistics to comparative metagenomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

UniFrac: a new phylogenetic method for comparing microbial communities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

Bacterial diversity in human subgingival plaque

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4010126

Sulfate-reducing bacteria in relation with other potential periodontal pathogens

21 June 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24076764

12 December 2020

inferred from PubMed ID database lookup

Bacterial identification and analytic challenges in clinical microbiome studies

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24076764

12 December 2020

inferred from PubMed ID database lookup

A metagenome-wide association study of gut microbiota in type 2 diabetes

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNMETH.2658

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NMETH.2658

1 reference

Dimensions Publication ID

28 July 2017

0 references

1 reference

28 July 2017

1 reference