(Q33573550)

28 July 2017

title

Learning "graph-mer" motifs that predict gene expression trajectories in development (English)

1 reference

28 July 2017

5

Christina Leslie

1 reference

28 July 2017

4

Valerie Reinke

1 reference

28 July 2017

Xuejing Li

1

1 reference

28 July 2017

Casandra Panea

series ordinal

2

1 reference

28 July 2017

Chris H Wiggins

series ordinal

3

1 reference

28 July 2017

publication date

29 April 2010

1 reference

PLOS Computational Biology

28 July 2017

published in

1 reference

28 July 2017

volume

6

1 reference

28 July 2017

issue

4

1 reference

28 July 2017

page(s)

e1000761

1 reference

Creative Commons Attribution 4.0 International

28 July 2017

copyright license

start time

29 April 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

A primer on regression methods for decoding cis-regulatory logic

1 reference

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A predictive model of the oxygen and heme regulatory network in yeast

21 June 2018

1 reference

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Group SCAD regression analysis for microarray time course gene expression data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861633

Classification of microarray data using gene networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861633

Reconstructing dynamic regulatory maps

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861633

MotifScorer: using a compendium of microarrays to identify regulatory motifs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861633

A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861633

Partial least squares: a versatile tool for the analysis of high-dimensional genomic data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861633

The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861633

Assessing computational tools for the discovery of transcription factor binding sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861633

Cytoscape: a software environment for integrated models of biomolecular interaction networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861633

Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861633

An automated method for finding molecular complexes in large protein interaction networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861633

Initial sequencing and comparative analysis of the mouse genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861633

Regulatory element detection using correlation with expression.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861633

Principal components analysis to summarize microarray experiments: application to sporulation time series

21 June 2018

1 reference

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Basic helix-loop-helix proteins can act at the E-box within the serum response element of the c-fos promoter to influence hormone-induced promoter activation in Sertoli cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861633

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861633

Genome-wide germline-enriched and sex-biased expression profiles in Caenorhabditis elegans

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000761

Predicting gene expression from sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000761

Predicting expression patterns from regulatory sequence in Drosophila segmentation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000761

Genomic analysis of gene expression in C. elegans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000761

SIMPLS: An alternative approach to partial least squares regression

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000761

elt-1, a gene encoding a Caenorhabditis elegans GATA transcription factor, is highly expressed in the germ lines with msp genes as the potential targets.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861633

10.1371/JOURNAL.PCBI.1000761

31 October 2018

Identifiers

DOI

1 reference

28 July 2017

DBLP publication ID

journals/ploscb/LiPWRL10

1 reference

DBLP Dataset 2021-01-02

release_kdxxk5b7lzbgrazg4kany5s7ie

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/kdxxk5b7lzbgrazg4kany5s7ie

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

2861633

1 reference

28 July 2017

1 reference