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Deciphering the Regulatory Network between the SREBP Pathway and Protein Secretion in Neurospora crassa.
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scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
5395666
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28420736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 March 2020
title
Deciphering the Regulatory Network between the SREBP Pathway and Protein Secretion in Neurospora crassa
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
5395666
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28420736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 March 2020
main subject
UBX domain-containing protein
0 references
Sterol regulatory element binding protein sre-2, putative
0 references
Sterol regulatory element binding protein sre-2, putative
0 references
acetyl-CoA acetyltransferase-1
0 references
Lanosterol 14-alpha demethylase, putative
0 references
DSC E3 ubiquitin ligase complex subunit 4, putative
0 references
Putative sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating
0 references
3-hydroxy-3-methylglutaryl-coenzyme A reductase
0 references
Peptide peptidase SppA, putative
0 references
sterol 24-C-methyltransferase
0 references
UBA domain-containing protein Ucp14
0 references
DSC E3 ubiquitin ligase complex subunit 3, putative
0 references
C-5 sterol desaturase
0 references
cell division control protein Cdc48, variant 1
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Delta(14)-sterol reductase, putative
0 references
lathosterol oxidase
0 references
terpenoid-3
0 references
squalene monooxygenase, putative
0 references
putative methylsterol monooxygenase
0 references
putative methylsterol monooxygenase
0 references
Ergosterol biosynthetic protein 28, putative
0 references
phosphomevalonate kinase
0 references
cytochrome P450 61
0 references
Mevalonate kinase
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sterol regulatory element-binding protein cleavage-activating protein
0 references
DSC E3 ubiquitin ligase complex subunit 1, putative
0 references
lanosterol synthase
0 references
farnesyl-pyrophosphate synthetase
0 references
Delta(24(24(1)))-sterol reductase
0 references
sterol O-acyltransferase-1
0 references
C-8 sterol isomerase, putative
0 references
HLH transcription factor
0 references
hydroxymethylglutaryl-CoA synthase
0 references
glucose-regulated protein
0 references
steroid-1
0 references
squalene synthetase, variant 1
0 references
squalene synthetase
0 references
rhomboid protein 2
0 references
fungal cellulose binding domain-containing protein
0 references
Diphosphomevalonate decarboxylase
0 references
Neurospora crassa
1 reference
based on heuristic
inferred from title
author
N Louise Glass
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
5395666
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28420736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 March 2020
author name string
Lina Qin
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
5395666
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28420736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 March 2020
Vincent W Wu
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
5395666
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28420736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 March 2020
publication date
18 April 2017
1 reference
stated in
Europe PubMed Central
PMC publication ID
5395666
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28420736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 March 2020
published in
mBio
1 reference
stated in
Europe PubMed Central
PMC publication ID
5395666
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28420736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 March 2020
volume
8
1 reference
stated in
Europe PubMed Central
PMC publication ID
5395666
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28420736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 March 2020
issue
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
5395666
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28420736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 March 2020
describes a project that uses
DESeq2
object named as
DESeq2
DeSeq
1 reference
stated in
CZ Software Mentions: A large dataset of software mentions in the biomedical literature
DESeq2
0 references
cites work
RbdB, a Rhomboid Protease Critical for SREBP Activation and Virulence in Aspergillus fumigatus
1 reference
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PubMed Central
reference URL
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21 June 2018
The molecular basis of polysaccharide cleavage by lytic polysaccharide monooxygenases.
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21 June 2018
The signal peptide peptidase SppA is involved in sterol regulatory element-binding protein cleavage and hypoxia adaptation in Aspergillus nidulans
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PubMed Central
reference URL
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21 June 2018
Identification of Rbd2 as a candidate protease for sterol regulatory element binding protein (SREBP) cleavage in fission yeast.
1 reference
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PubMed Central
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21 June 2018
Direct target network of the Neurospora crassa plant cell wall deconstruction regulators CLR-1, CLR-2, and XLR-1.
1 reference
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PubMed Central
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21 June 2018
Deletion of homologs of the SREBP pathway results in hyper-production of cellulases in Neurospora crassa and Trichoderma reesei.
1 reference
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PubMed Central
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21 June 2018
The bZIP Transcription Factor HAC-1 Is Involved in the Unfolded Protein Response and Is Necessary for Growth on Cellulose in Neurospora crassa
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
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21 June 2018
Genome-wide analysis of the endoplasmic reticulum stress response during lignocellulase production in Neurospora crassa
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
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21 June 2018
Unfolded protein response in filamentous fungi-implications in biotechnology.
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PubMed Central
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21 June 2018
ChIP-seq and in vivo transcriptome analyses of the Aspergillus fumigatus SREBP SrbA reveals a new regulator of the fungal hypoxia response and virulence
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
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21 June 2018
A comparative systems analysis of polysaccharide-elicited responses in Neurospora crassa reveals carbon source-specific cellular adaptations
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PubMed Central
reference URL
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21 June 2018
Functional characterisation of the non-essential protein kinases and phosphatases regulating Aspergillus nidulans hydrolytic enzyme production
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PubMed Central
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21 June 2018
Analysis of a conserved cellulase transcriptional regulator reveals inducer-independent production of cellulolytic enzymes in Neurospora crassa
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
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21 June 2018
Using a model filamentous fungus to unravel mechanisms of lignocellulose deconstruction
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
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21 June 2018
An inhibitor of nonhomologous end-joining abrogates double-strand break repair and impedes cancer progression
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
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21 June 2018
Dsc orthologs are required for hypoxia adaptation, triazole drug responses, and fungal virulence in Aspergillus fumigatus
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PubMed Central
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21 June 2018
Protein trafficking, ergosterol biosynthesis and membrane physics impact recombinant protein secretion in Pichia pastoris
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
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21 June 2018
Yeast SREBP cleavage activation requires the Golgi Dsc E3 ligase complex.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
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21 June 2018
Endoplasmic reticulum stress and lipid dysregulation
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
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21 June 2018
Mechanisms of sterol uptake and transport in yeast.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
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21 June 2018
Differential expression analysis for sequence count data
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PubMed Central
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21 June 2018
Sterol regulatory element binding proteins in fungi: hypoxic transcription factors linked to pathogenesis
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
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21 June 2018
Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
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21 June 2018
Cryptococcus neoformans Site-2 protease is required for virulence and survival in the presence of azole drugs
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
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21 June 2018
A sterol-regulatory element binding protein is required for cell polarity, hypoxia adaptation, azole drug resistance, and virulence in Aspergillus fumigatus
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
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21 June 2018
4-Methyl sterols regulate fission yeast SREBP-Scap under low oxygen and cell stress.
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
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21 June 2018
Sre1p, a regulator of oxygen sensing and sterol homeostasis, is required for virulence in Cryptococcus neoformans
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
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21 June 2018
A link between virulence and homeostatic responses to hypoxia during infection by the human fungal pathogen Cryptococcus neoformans
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
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21 June 2018
Biomass recalcitrance: engineering plants and enzymes for biofuels production
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
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21 June 2018
Environmental, economic, and energetic costs and benefits of biodiesel and ethanol biofuels
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stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
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21 June 2018
A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
retrieved
21 June 2018
SREBPs: sterol-regulated transcription factors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
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21 June 2018
The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
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21 June 2018
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
retrieved
21 June 2018
Mammalian transcription factor ATF6 is synthesized as a transmembrane protein and activated by proteolysis in response to endoplasmic reticulum stress
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
retrieved
21 June 2018
Cellobiose dehydrogenase and a copper-dependent polysaccharide monooxygenase potentiate cellulose degradation by Neurospora crassa
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
retrieved
31 October 2018
SREBP pathway responds to sterols and functions as an oxygen sensor in fission yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
retrieved
31 October 2018
Protein production and induction of the unfolded protein response in Trichoderma reesei strain Rut-C30 and its transformant expressing endoglucanase I with a hydrophobic tag.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
retrieved
31 October 2018
Efficient cellulase production by Trichoderma reesei in continuous cultivation on lactose medium with a computer-controlled feeding strategy
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
retrieved
31 October 2018
Ligand-independent dimerization activates the stress response kinases IRE1 and PERK in the lumen of the endoplasmic reticulum.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395666
retrieved
31 October 2018
Identifiers
DOI
10.1128/MBIO.00233-17
1 reference
stated in
Europe PubMed Central
PMC publication ID
5395666
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28420736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 March 2020
PMC publication ID
5395666
1 reference
stated in
Europe PubMed Central
PMC publication ID
5395666
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28420736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 March 2020
PubMed publication ID
28420736
1 reference
stated in
Europe PubMed Central
PMC publication ID
5395666
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28420736%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 March 2020
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