(Q33579143)

28 July 2017

title

Potential functional roles of DNA demethylation intermediates (English)

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28 July 2017

1 reference

ChEBI release 2020-05-28

Chun-Xiao Song

1

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author name string

Chuan He

series ordinal

2

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28 July 2017

publication date

8 August 2013

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Trends in Biochemical Sciences

28 July 2017

number of pages

5

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based on heuristic

inferred from page(s)

published in

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28 July 2017

volume

38

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28 July 2017

issue

10

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28 July 2017

page(s)

480-484

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Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming

28 July 2017

cites work

1 reference

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Functions of DNA methylation and hydroxymethylation in mammalian development

21 June 2018

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DNA methylation and methylcytosine oxidation in cell fate decisions

21 June 2018

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5-Hydroxymethylcytosine: generation, fate, and genomic distribution

21 June 2018

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Epigenetic programming and reprogramming during development

21 June 2018

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Different roles for Tet1 and Tet2 proteins in reprogramming-mediated erasure of imprints induced by EGC fusion

21 June 2018

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Stage-specific roles for tet1 and tet2 in DNA demethylation in primordial germ cells

21 June 2018

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DNA methylation: roles in mammalian development

21 June 2018

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NANOG-dependent function of TET1 and TET2 in establishment of pluripotency

21 June 2018

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MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system.

21 June 2018

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Germline DNA demethylation dynamics and imprint erasure through 5-hydroxymethylcytosine

21 June 2018

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The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells

21 June 2018

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Tet1 controls meiosis by regulating meiotic gene expression

21 June 2018

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Mapping recently identified nucleotide variants in the genome and transcriptome

21 June 2018

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Early-stage epigenetic modification during somatic cell reprogramming by Parp1 and Tet2

21 June 2018

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Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase

21 June 2018

1 reference

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5-formylcytosine and 5-carboxylcytosine reduce the rate and substrate specificity of RNA polymerase II transcription.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4013277

Functions of DNA methylation: islands, start sites, gene bodies and beyond

21 June 2018

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Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome.

21 June 2018

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Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution

21 June 2018

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Parallel mechanisms of epigenetic reprogramming in the germline

21 June 2018

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Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells

21 June 2018

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Generation and replication-dependent dilution of 5fC and 5caC during mouse preimplantation development.

21 June 2018

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5-Hydroxymethylcytosine is strongly depleted in human cancers but its levels do not correlate with IDH1 mutations

21 June 2018

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5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging

21 June 2018

1 reference

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A decade of exploring the cancer epigenome - biological and translational implications

21 June 2018

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Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryos

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4013277

DNA demethylation dynamics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4013277

The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes

21 June 2018

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Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: potential implications for active demethylation of CpG sites

21 June 2018

1 reference

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Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA

21 June 2018

1 reference

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Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4013277

Life and death of transcriptional co-activator p300.

21 June 2018

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The discovery of 5-formylcytosine in embryonic stem cell DNA.

21 June 2018

1 reference

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Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4013277

TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4013277

Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4013277

5-Hydroxymethylcytosine in the mammalian zygote is linked with epigenetic reprogramming

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4013277

Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4013277

Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4013277

Active DNA demethylation: many roads lead to Rome.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4013277

Active DNA demethylation mediated by DNA glycosylases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4013277

The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4013277

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4013277

Genomic DNA methylation: the mark and its mediators

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4013277

Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4013277

Selective chemical labelling of 5-formylcytosine in DNA by fluorescent dyes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4013277

Replacement of Oct4 by Tet1 during iPSC induction reveals an important role of DNA methylation and hydroxymethylation in reprogramming.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4013277

Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4013277

Dynamics of 5-hydroxymethylcytosine and chromatin marks in Mammalian neurogenesis.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4013277

DNA-binding factors shape the mouse methylome at distal regulatory regions

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4013277

Mechanism and Stem-Cell Activity of 5-Carboxycytosine Decarboxylation Determined by Isotope Tracing

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4013277

10.1016/J.TIBS.2013.07.003

31 October 2018

Identifiers

DOI

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28 July 2017

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28 July 2017

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