(Q33579375)

28 July 2017

title

High-throughput and targeted in-depth mass spectrometry-based approaches for biofluid profiling and biomarker discovery (English)

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28 July 2017

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2

Sander Piersma

1 reference

28 July 2017

1

Connie R Jimenez

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28 July 2017

Thang V Pham

3

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28 July 2017

publication date

1 December 2007

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28 July 2017

published in

Biomarkers in Medicine

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28 July 2017

volume

1

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28 July 2017

issue

4

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28 July 2017

page(s)

541-565

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Mass spectrometry-based proteomics

28 July 2017

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SELDI-TOF-based serum proteomic pattern diagnostics for early detection of cancer

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The MALDI-TOF mass spectrometric view of the plasma proteome and peptidome

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Sample handling for mass spectrometric proteomic investigations of human sera.

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Reproducibility in protein profiling by MALDI-TOF mass spectrometry

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Direct tandem mass spectrometry reveals limitations in protein profiling experiments for plasma biomarker discovery

21 January 2018

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Analysis of Human Proteome Organization Plasma Proteome Project (HUPO PPP) reference specimens using surface enhanced laser desorption/ionization-time of flight (SELDI-TOF) mass spectrometry: multi-institution correlation of spectra and identificati

21 January 2018

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Evaluation of serum protein profiling by surface-enhanced laser desorption/ionization time-of-flight mass spectrometry for the detection of prostate cancer: I. Assessment of platform reproducibility

21 January 2018

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Data analysis of assorted serum peptidome profiles

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21 January 2018

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Impact of preanalytical variables on the analysis of biological fluids in proteomic studies.

21 January 2018

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Use of proteomic patterns in serum to identify ovarian cancer

21 January 2018

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Serum proteomic profiling by matrix-assisted laser desorption-ionization time-of-flight mass spectrometry for cancer diagnosis: next steps

21 January 2018

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Mass spectrometry as a diagnostic and a cancer biomarker discovery tool: opportunities and potential limitations

21 January 2018

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Lessons from controversy: ovarian cancer screening and serum proteomics.

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Bias as a threat to the validity of cancer molecular-marker research

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Potential interferences from blood collection tubes in mass spectrometric analyses of serum polypeptides

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Influences of blood sample processing on low-molecular-weight proteome identified by surface-enhanced laser desorption/ionization mass spectrometry

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Correcting common errors in identifying cancer-specific serum peptide signatures

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Standardized peptidome profiling of human urine by magnetic bead separation and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Pattern changes of pituitary peptides in rat after salt-loading as detected by means of direct, semiquantitative mass spectrometric profiling.

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Strategies for plasma proteomic profiling of cancers

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Serum peptidome for cancer detection: spinning biologic trash into diagnostic gold

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Differential exoprotease activities confer tumor-specific serum peptidome patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

A novel, high-throughput workflow for discovery and identification of serum carrier protein-bound peptide biomarker candidates in ovarian cancer samples

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

High-resolution serum proteomic profiling of Alzheimer disease samples reveals disease-specific, carrier-protein-bound mass signatures

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Analysis of albumin-associated peptides and proteins from ovarian cancer patients

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Characterization of the low molecular weight human serum proteome

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Proteomic analysis using protein chips to detect biomarkers in cervical and amniotic fluid in women with intra-amniotic inflammation

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Proteomics analysis of human cerebrospinal fluid

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.4.541

The use of proteomics in biomarker discovery in neurodegenerative diseases

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Unravelling in vitro variables of major importance for the outcome of mass spectrometry-based serum proteomics

21 January 2018

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Mass spectrometry and protein analysis

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Stable isotope labeling by amino acids in cell culture for quantitative proteomics

21 January 2018

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Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

21 January 2018

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Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

21 January 2018

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Analysis of quantitative proteomic data generated via multidimensional protein identification technology

21 January 2018

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A platform for accurate mass and time analyses of mass spectrometry data

21 January 2018

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Detecting differential and correlated protein expression in label-free shotgun proteomics

21 January 2018

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Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Differential mass spectrometry: a label-free LC-MS method for finding significant differences in complex peptide and protein mixtures.

21 January 2018

1 reference

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Informatics platform for global proteomic profiling and biomarker discovery using liquid chromatography-tandem mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

MapQuant: open-source software for large-scale protein quantification

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

TOPP--the OpenMS proteomics pipeline

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Tools for computational processing of LC-MS datasets: a user's perspective.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

PEPPeR, a platform for experimental proteomic pattern recognition.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Bladder cancer associated glycoprotein signatures revealed by urinary proteomic profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Identification of N-linked glycoproteins in human saliva by glycoprotein capture and mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Proteomic analysis of human cervico-vaginal fluid

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

A combined dataset of human cerebrospinal fluid proteins identified by multi-dimensional chromatography and tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

HUPO Plasma Proteome Project specimen collection and handling: towards the standardization of parameters for plasma proteome samples

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Peptidomic analysis of human blood specimens: comparison between plasma specimens and serum by differential peptide display

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Prerequisites for peptidomic analysis of blood samples: I. Evaluation of blood specimen qualities and determination of technical performance characteristics

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Organic solvent extraction of proteins and peptides from serum as an effective sample preparation for detection and identification of biomarkers by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

The amplified peptidome: the new treasure chest of candidate biomarkers

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

High throughput quantitative analysis of serum proteins using glycopeptide capture and liquid chromatography mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Lectin capture strategies combined with mass spectrometry for the discovery of serum glycoprotein biomarkers

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Comparative proteomic analysis of de-N-glycosylated serum from hepatitis B carriers reveals polypeptides that correlate with disease status

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Approaches to the study of the cell secretome

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Proteomic characterization of the interstitial fluid perfusing the breast tumor microenvironment: a novel resource for biomarker and therapeutic target discovery

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Quantitative proteomic analysis of proteins released by neoplastic prostate epithelium

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

A novel technique to specifically analyze the secretome of cells and tissues

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Differential proteome analysis of conditioned media to detect Smad4 regulated secreted biomarkers in colon cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

An approach to studying lung cancer-related proteins in human blood.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Biomarker discovery from pancreatic cancer secretome using a differential proteomic approach

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Proteomic identification of the wt-p53-regulated tumor cell secretome.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Improved mass spectrometric proteomic profiling of the secretome of rat vascular endothelial cells

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Secretory protein enrichment and analysis: an optimized approach applied on cancer cell lines using 2D LC-MS/MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Proteomics-based identification of secreted protein dihydrodiol dehydrogenase as a novel serum markers of non-small cell lung cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Elevation of serum l-lactate dehydrogenase B correlated with the clinical stage of lung cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Toward a better analysis of secreted proteins: the example of the myeloid cells secretome

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Biomarker discovery from uveal melanoma secretomes: identification of gp100 and cathepsin D in patient serum.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Beta-2-microglobulin is an androgen-regulated secreted protein elevated in serum of patients with advanced prostate cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Elucidating the secretion proteome of human embryonic stem cell-derived mesenchymal stem cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Discovery of candidate tumor markers for prostate cancer via proteomic analysis of cell culture-conditioned medium

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Proteomics-based identification of proteins secreted in apical surface fluid of squamous metaplastic human tracheobronchial epithelial cells cultured by three-dimensional organotypic air-liquid interface method

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Identification of differentially secreted biomarkers using LC-MS/MS in isogenic cell lines representing a progression of breast cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Proteomics analysis of conditioned media from three breast cancer cell lines: a mine for biomarkers and therapeutic targets

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Identification of candidate biomarker proteins released by human endometrial and cervical cancer cells using two-dimensional liquid chromatography/tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Characterization of the human visceral adipose tissue secretome

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Secretome of primary cultures of human adipose-derived stem cells: modulation of serpins by adipogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Malignant effusions are sources of fibronectin and other promigratory and proinvasive components

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Determination of beta-amyloid peptide signatures in cerebrospinal fluid using immunoprecipitation-mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

An Alzheimer's disease-specific beta-amyloid fragment signature in cerebrospinal fluid

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Mass spectrometric quantitation of peptides and proteins using Stable Isotope Standards and Capture by Anti-Peptide Antibodies (SISCAPA).

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Antibody-based enrichment of peptides on magnetic beads for mass-spectrometry-based quantification of serum biomarkers

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Place of pattern in proteomic biomarker discovery

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Protein biomarker discovery and validation: the long and uncertain path to clinical utility

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

Identification of Glycoproteins in Human Cerebrospinal Fluid with a Complementary Proteomic Approach

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

OvaCheck: let's not dismiss the concept

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.4.541

21 January 2018

Identifiers

DOI

10.2217/17520363.1.4.541

1 reference

28 July 2017

1 reference