(Q33585862)

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Transcript profiling of two alfalfa genotypes with contrasting cell wall composition in stems using a cross-species platform: optimizing analysis by masking biased probes

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20497574%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

Transcript profiling of two alfalfa genotypes with contrasting cell wall composition in stems using a cross-species platform: optimizing analysis by masking biased probes (English)

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3 February 2020

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inferred from title

1

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3 February 2020

author name string

Wayne Wenzhong Xu

2

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3 February 2020

Mesfin Tesfaye

3

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3 February 2020

JoAnn F S Lamb

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3 February 2020

Hans-Joachim G Jung

5

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3 February 2020

Kathryn A VandenBosch

6

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3 February 2020

Carroll P Vance

7

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3 February 2020

John W Gronwald

8

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3 February 2020

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24 May 2010

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3 February 2020

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3 February 2020

11

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3 February 2020

323

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3 February 2020

describes a project that uses

object named as

affy

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

https://scigraph.springernature.com/pub.10.1186/1471-2164-11-323

0 references

MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis

1 reference

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14 July 2018

Single-species microarrays and comparative transcriptomics

1 reference

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14 July 2018

Plant receptor-like serine threonine kinases: roles in signaling and plant defense

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Coordinate gene regulation during hematopoiesis is related to genomic organization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

SNPs matter: impact on detection of differential expression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Local coexpression domains in the genome of rice show no microsynteny with Arabidopsis domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Lignin modification improves fermentable sugar yields for biofuel production

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Cross-species analysis of gene expression in non-model mammals: reproducibility of hybridization on high density oligonucleotide microarrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Transcriptional regulation in wood formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Cross-species hybridizations on a multi-species cDNA microarray to identify evolutionarily conserved genes expressed in oocytes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

A comparison of the Thlaspi caerulescens and Thlaspi arvense shoot transcriptomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Using genomic DNA-based probe-selection to improve the sensitivity of high-density oligonucleotide arrays when applied to heterologous species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Chromosomal clustering of a human transcriptome reveals regulatory background

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Transcription switches for protoxylem and metaxylem vessel formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

EgMYB2, a new transcriptional activator from Eucalyptus xylem, regulates secondary cell wall formation and lignin biosynthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Genetic regulation of gene expression during shoot development in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Local coexpression domains of two to four genes in the genome of Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Expression of cellulose synthase-like (Csl) genes in insect cells reveals that CslA family members encode mannan synthases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Identification and utilization of inter-species conserved (ISC) probesets on Affymetrix human GeneChip platforms for the optimization of the assessment of expression patterns in non human primate (NHP) samples

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Estimating genome conservation between crop and model legume species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

A method for cross-species gene expression analysis with high-density oligonucleotide arrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Coexpression of neighboring genes in the genome of Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

A neutral model of transcriptome evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

A sequence-based genetic map of Medicago truncatula and comparison of marker colinearity with M. sativa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

A new resource for cereal genomics: 22K barley GeneChip comes of age.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Sister grouping of chimpanzees and humans as revealed by genome-wide phylogenetic analysis of brain gene expression profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Cross-species microarray transcript profiling reveals high constitutive expression of metal homeostasis genes in shoots of the zinc hyperaccumulator Arabidopsis halleri

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Elevated gene expression levels distinguish human from non-human primate brains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Rapid evolution of male-biased gene expression in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Large-scale identification of single-feature polymorphisms in complex genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Summaries of Affymetrix GeneChip probe level data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Coexpression of neighboring genes in Caenorhabditis elegans is mostly due to operons and duplicate genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Interactions among three distinct CesA proteins essential for cellulose synthesis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Gene expression neighborhoods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Intra- and interspecific variation in primate gene expression patterns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Genome organization in dicots: genome duplication in Arabidopsis and synteny between soybean and Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

The irregular xylem3 locus of Arabidopsis encodes a cellulose synthase required for secondary cell wall synthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

14 July 2018

Arabidopsis microarrays identify conserved and differentially expressed genes involved in shoot growth and development from distantly related plant species.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-323

21 January 2018

Genome-wide patterns of expression in Drosophila pure species and hybrid males.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-323

21 January 2018

Common pattern of evolution of gene expression level and protein sequence in Drosophila

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-323

21 January 2018

Selective and powerful stress gene expression in Arabidopsis in response to malondialdehyde.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-323

21 January 2018

NAC transcription factors, NST1 and NST3, are key regulators of the formation of secondary walls in woody tissues of Arabidopsis.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-323

21 January 2018

SND1, a NAC domain transcription factor, is a key regulator of secondary wall synthesis in fibers of Arabidopsis.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-323

21 January 2018

The MYB46 transcription factor is a direct target of SND1 and regulates secondary wall biosynthesis in Arabidopsis.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-323

21 January 2018

A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-323

21 January 2018

Arabidopsis MYB26/MALE STERILE35 regulates secondary thickening in the endothecium and is essential for anther dehiscence.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-323

21 January 2018

Functional analysis of tobacco LIM protein Ntlim1 involved in lignin biosynthesis.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-323

21 January 2018

Comparative analysis of the receptor-like kinase family in Arabidopsis and rice.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-323

21 January 2018

A receptor-like kinase mediates the response of Arabidopsis cells to the inhibition of cellulose synthesis.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-323

21 January 2018

Two leucine-rich repeat receptor kinases mediate signaling, linking cell wall biosynthesis and ACC synthase in Arabidopsis

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-323

21 January 2018

A cell wall-associated, receptor-like protein kinase.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-323

21 January 2018

WAKs: cell wall-associated kinases linking the cytoplasm to the extracellular matrix

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-323

21 January 2018

Loosening lignin's grip on biofuel production.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

31 October 2018

Comparative microarray analysis of Arabidopsis thaliana and Arabidopsis halleri roots identifies nicotianamine synthase, a ZIP transporter and other genes as potential metal hyperaccumulation factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893600

31 October 2018

Utilization of tomato microarrays for comparative gene expression analysis in the Solanaceae

1 reference

https://pubmed.ncbi.nlm.nih.gov/20497574

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multiple cellulose synthase catalytic subunits are required for cellulose synthesis in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/20497574

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Collapsed xylem phenotype of Arabidopsis identifies mutants deficient in cellulose deposition in the secondary cell wall

1 reference

https://pubmed.ncbi.nlm.nih.gov/20497574

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Natural selection promotes the conservation of linkage of co-expressed genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/20497574

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Islands of co-expressed neighbouring genes in Arabidopsis thaliana suggest higher-order chromosome domains

1 reference

https://pubmed.ncbi.nlm.nih.gov/20497574

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sex-dependent gene expression and evolution of the Drosophila transcriptome

1 reference

https://pubmed.ncbi.nlm.nih.gov/20497574

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The NAC transcription factors NST1 and NST2 of Arabidopsis regulate secondary wall thickenings and are required for anther dehiscence

1 reference

https://pubmed.ncbi.nlm.nih.gov/20497574

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2164-11-323

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20497574%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

Dimensions Publication ID

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-11-323

9 September 2019

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20497574%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20497574%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

ResearchGate publication ID

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