(Q33586983)

28 July 2017

title

Prediction of CpG-island function: CpG clustering vs. sliding-window methods (English)

1 reference

Pedro Juan Carpena Sánchez

28 July 2017

Guillermo Barturen

2

0 references

Pedro Carpena

3

0 references

José L. Oliver

José L Oliver

Pedro Luis Luque-Escamilla

6

0 references

Pedro L Luque-Escamilla

4

0 references

Michael Hackenberg

Michael Hackenberg

1

0 references

author name string

Christopher Previti

5

1 reference

28 July 2017

language of work or name

English

0 references

publication date

26 May 2010

1 reference

28 July 2017

1 reference

28 July 2017

volume

11

1 reference

28 July 2017

page(s)

327

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-11-327

28 July 2017

exact match

0 references

cites work

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Human DNA methylomes at base resolution show widespread epigenomic differences

28 July 2018

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A species-generalized probabilistic model-based definition of CpG islands

28 July 2018

1 reference

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High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing

28 July 2018

1 reference

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CpG islands--'a rough guide'.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887419

CpG islands or CpG clusters: how to identify functional GC-rich regions in a genome?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887419

On the nature of human housekeeping genes

28 July 2018

1 reference

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CpGIF: an algorithm for the identification of CpG islands

28 July 2018

1 reference

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A novel CpG island set identifies tissue-specific methylation at developmental gene loci

28 July 2018

1 reference

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28 July 2018

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CG dinucleotide clustering is a species-specific property of the genome

28 July 2018

1 reference

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CpG island mapping by epigenome prediction

28 July 2018

1 reference

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Hyperconserved CpG domains underlie Polycomb-binding sites

28 July 2018

1 reference

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Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome

28 July 2018

1 reference

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28 July 2018

1 reference

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CpGcluster: a distance-based algorithm for CpG-island detection

28 July 2018

1 reference

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Permissive transcriptional activity at the centromere through pockets of DNA hypomethylation

28 July 2018

1 reference

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A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters

28 July 2018

1 reference

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28 July 2018

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

28 July 2018

1 reference

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Association of tissue-specific differentially methylated regions (TDMs) with differential gene expression

28 July 2018

1 reference

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A gene atlas of the mouse and human protein-encoding transcriptomes

28 July 2018

1 reference

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An evaluation of new criteria for CpG islands in the human genome as gene markers

28 July 2018

1 reference

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Structure, function and evolution of CpG island promoters

28 July 2018

1 reference

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DNA methylation patterns and epigenetic memory

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887419

DNA methylation is the primary silencing mechanism for a set of germ line- and tumor-specific genes with a CpG-rich promoter

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887419

CpG islands in vertebrate genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887419

CpG-rich islands and the function of DNA methylation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887419

CpG islands as gene markers in the human genome.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887419

Redefining CpG islands using hidden Markov models

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887419

A nearly exhaustive search for CpG islands on whole chromosomes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887419

Profile analysis and prediction of tissue-specific CpG island methylation classes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887419

Do we use the appropriate controls for the identification of informative methylation markers for early cancer detection?

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887419

DBTSS: database of transcription start sites, progress report 2008.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887419

DNA methylation profiling of human chromosomes 6, 20 and 22

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887419

Compositional searching of CpG islands in the human genome

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887419

The CpG island searcher: a new WWW resource.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887419

Applications of recursive segmentation to the analysis of DNA sequences.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887419

Comprehensive analysis of CpG islands in human chromosomes 21 and 22

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887419

A gene hypermethylation profile of human cancer

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887419

Aberrant patterns of DNA methylation, chromatin formation and gene expression in cancer

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887419

Evaluation of gene structure prediction programs.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887419

CpG island methylator phenotype in cancer

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20500903

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20500903

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-11-327

1 reference

Dimensions Publication ID

28 July 2017

0 references

1 reference

28 July 2017

1 reference