(Q33587187)

28 July 2017

title

Transcriptome signatures in Helicobacter pylori-infected mucosa identifies acidic mammalian chitinase loss as a corpus atrophy marker (English)

1 reference

28 July 2017

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0 references

8

1 reference

28 July 2017

Kaisa Thorell

2

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Martin L. Hibberd

Martin Lloyd Hibberd

5

0 references

Intawat Nookaew

1

Intawat Nookaew

1 reference

28 July 2017

9

Samuel B Lundin

1 reference

28 July 2017

7

Sven Pettersson

1 reference

28 July 2017

Kuntal Worah

3

1 reference

28 July 2017

Shugui Wang

4

1 reference

28 July 2017

Henrik Sjövall

6

1 reference

28 July 2017

publication date

11 October 2013

1 reference

28 July 2017

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28 July 2017

volume

6

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28 July 2017

page(s)

41

1 reference

describes a project that uses

28 July 2017

Cytoscape

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

limma

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/4015281

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1755-8794-6-41

0 references

cites work

Insectivorous bats digest chitin in the stomach using acidic mammalian chitinase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Quantification of Chitinase mRNA Levels in Human and Mouse Tissues by Real-Time PCR: Species-Specific Expression of Acidic Mammalian Chitinase in Stomach Tissues

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Estimates of worldwide burden of cancer in 2008: GLOBOCAN 2008

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Gastric epithelial stem cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Role of chitin and chitinase/chitinase-like proteins in inflammation, tissue remodeling, and injury.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Helicobacter pylori and gastric cancer: factors that modulate disease risk

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Bone morphogenetic protein signaling regulates gastric epithelial cell development and proliferation in mice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Role of innate immunity in Helicobacter pylori-induced gastric malignancy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Spasmolytic polypeptide-expressing metaplasia and intestinal metaplasia: time for reevaluation of metaplasias and the origins of gastric cancer.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Inducible activation of Cre recombinase in adult mice causes gastric epithelial atrophy, metaplasia, and regenerative changes in the absence of "floxed" alleles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Gene expression profiling of metaplastic lineages identifies CDH17 as a prognostic marker in early stage gastric cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

A global view of protein expression in human cells, tissues, and organs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Acidic mammalian chitinase regulates epithelial cell apoptosis via a chitinolytic-independent mechanism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Antralization of the gastric mucosa of the incisura angularis and its gastrin expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

lumi: a pipeline for processing Illumina microarray

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

A molecular signature of gastric metaplasia arising in response to acute parietal cell loss

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Bone morphogenetic protein signaling suppresses tumorigenesis at gastric epithelial transition zones in mice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

The real-time polymerase chain reaction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Uncovering transcriptional regulation of metabolism by using metabolic network topology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Inflammatory gene profiles in gastric mucosa during Helicobacter pylori infection in humans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Cytoscape: a software environment for integrated models of biomolecular interaction networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Molecular characterization of mouse gastric zymogenic cells.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

A new non-linear normalization method for reducing variability in DNA microarray experiments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Interplay between bone morphogenetic proteins and cognate binding proteins in bone and cartilage development: noggin, chordin and DAN.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Identification of a metaplastic cell lineage associated with human gastric adenocarcinoma.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Intestinal metaplasia of the stomach. A status report

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Blood flow and mucoid cap protect against penetration of carcinogens into superficially injured gastric mucosa of rats.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Mechanism of Stress Ulcer: Influence of Hypovolemic Shock on Energy Metabolism in the Gastric Mucosa

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

The gastric mucosal epithelial barrier: role of mucus and fibrin

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Robust multi-scale clustering of large DNA microarray datasets with the consensus algorithm

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1755-8794-6-41

Gene expression profiling in human gastric mucosa infected with Helicobacter pylori

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1755-8794-6-41

CHIT1 and AMCase expression in human gastric mucosa: correlation with inflammation and Helicobacter pylori infection

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1755-8794-6-41

Three-dimensional reconstruction of cytoplasmic membrane networks in parietal cells.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015281

Mechanism of stress ulcer. 3. Effects of hemorrhagic shock on energy metabolism in the mucosa of the antrum, corpus, and fundus of the rabbit stomach

31 October 2018

1 reference

12 December 2020

Helicobacter pylori and antrum erosion-specific gene expression patterns: the discriminative role of CXCL13 and VCAM1 transcripts.

1 reference

12 December 2020

Cellular expression of gut chitinase mRNA in the gastrointestinal tract of mice and chickens

1 reference

12 December 2020

Stereological investigations on human gastric mucosa: I. Normal oxyntic mucosa

1 reference

12 December 2020

Oxidative phosphorylation and its coupling to mitochondrial creatine and adenylate kinases in human gastric mucosa

1 reference

12 December 2020

Antral-type mucosa in the gastric incisura, body, and fundus (antralization): a link between Helicobacter pylori infection and intestinal metaplasia?

1 reference

12 December 2020

Housekeeping gene variability in normal and cancerous colorectal, pancreatic, esophageal, gastric and hepatic tissues

1 reference

12 December 2020

Identifiers

DOI

10.1186/1755-8794-6-41

1 reference

Dimensions Publication ID

28 July 2017

0 references

1 reference

28 July 2017

1 reference