(Q33589680)

28 July 2017

title

Creation of a federated database of blood proteins: a powerful new tool for finding and characterizing biomarkers in serum (English)

1 reference

28 July 2017

0 references

0 references

4

Fay Betsou

1 reference

28 July 2017

John Marshall

1

1 reference

28 July 2017

Peter Bowden

series ordinal

2

1 reference

28 July 2017

Jean Claude Schmit

series ordinal

3

1 reference

28 July 2017

publication date

29 January 2014

1 reference

28 July 2017

1 reference

28 July 2017

volume

11

1 reference

28 July 2017

issue

1

1 reference

28 July 2017

page(s)

3

1 reference

Creative Commons Attribution 2.0 Generic

28 July 2017

copyright license

start time

29 January 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

describes a project that uses

SQL

1 reference

26 June 2022

https://europepmc.org/article/PMC/PMC4015845

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1186/1559-0275-11-3

0 references

cites work

Mass spectrometry of peptides and proteins from human blood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Targeted quantification of low ng/mL level proteins in human serum without immunoaffinity depletion

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Identification of evidence-based biospecimen quality-control tools: a report of the International Society for Biological and Environmental Repositories (ISBER) Biospecimen Science Working Group

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Urine levels of HMGB1 in Systemic Lupus Erythematosus patients with and without renal manifestations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Correlation of histone methyl marks with circulating nucleosomes in blood plasma of cancer patients

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Ryanodine receptor physiology and its role in disease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Abundance- and Activity-Based Proteomics in Platelet Biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Capture and qualitative analysis of the activated Fc receptor complex from live cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Predictive and prognostic value of circulating nucleosomes and serum biomarkers in patients with metastasized colorectal cancer undergoing Selective Internal Radiation Therapy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Identification of citrullinated histone H3 as a potential serum protein biomarker in a lethal model of lipopolysaccharide-induced shock

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Meta sequence analysis of human blood peptides and their parent proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Exosome secreted by MSC reduces myocardial ischemia/reperfusion injury

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Anucleate platelets generate progeny

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Precipitation and selective extraction of human serum endogenous peptides with analysis by quadrupole time-of-flight mass spectrometry reveals posttranslational modifications and low-abundance peptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

MSQuant, an open source platform for mass spectrometry-based quantitative proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Tandem mass spectrometry of human tryptic blood peptides calculated by a statistical algorithm and captured by a relational database with exploration by a general statistical analysis system

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

BiomarkerDigger: a versatile disease proteome database and analysis platform for the identification of plasma cancer biomarkers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

21 June 2018

The platelet proteome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Proteomic profiling of human plasma exosomes identifies PPARgamma as an exosome-associated protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Detection of microRNA expression in human peripheral blood microvesicles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Proteomic profiling of exosomes: current perspectives

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Endogenous peptides from biophysical and biochemical fractionation of serum analyzed by matrix-assisted laser desorption/ionization and electrospray ionization hybrid quadrupole time-of-flight

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Proteomic analysis of human blood serum using peptide library beads

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

The Stability of Broken Ends of Chromosomes in Zea Mays.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

SWAN-1, a Caenorhabditis elegans WD repeat protein of the AN11 family, is a negative regulator of Rac GTPase function

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

STRING: known and predicted protein-protein associations, integrated and transferred across organisms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Human serum proteins preseparated by electrophoresis or chromatography followed by tandem mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Neutrophil extracellular traps kill bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

TANDEM: matching proteins with tandem mass spectra

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Characterization of the low molecular weight human serum proteome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Toward a human blood serum proteome: analysis by multidimensional separation coupled with mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

The human plasma proteome: history, character, and diagnostic prospects

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Molecular cloning and characterization of CAPER, a novel coactivator of activating protein-1 and estrogen receptors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

A thyroid hormone receptor coactivator negatively regulated by the retinoblastoma protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Mutations affecting segment number and polarity in Drosophila

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Basic local alignment search tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

An integrated encyclopedia of DNA elements in the human genome

21 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1559-0275-11-3

Intercellular transfer of the oncogenic receptor EGFRvIII by microvesicles derived from tumour cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1559-0275-11-3

Quantitative statistical analysis of standard and human blood proteins from liquid chromatography, electrospray ionization, and tandem mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1559-0275-11-3

Identification and quantification of peptides and proteins secreted from prostate epithelial cells by unbiased liquid chromatography tandem mass spectrometry using goodness of fit and analysis of variance

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1559-0275-11-3

The Fc receptor-cytoskeleton complex from human neutrophils

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1559-0275-11-3

Ultra-high-efficiency strong cation exchange LC/RPLC/MS/MS for high dynamic range characterization of the human plasma proteome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1559-0275-11-3

Human serum proteins fractionated by preparative partition chromatography prior to LC-ESI-MS/MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1559-0275-11-3

Potential for false positive identifications from large databases through tandem mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1559-0275-11-3

Qscore: an algorithm for evaluating SEQUEST database search results

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1559-0275-11-3

Peptide-to-protein distribution versus a competition for significance to estimate error rate in blood protein identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1559-0275-11-3

Chi-square comparison of tryptic peptide-to-protein distributions of tandem mass spectrometry from blood with those of random expectation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1559-0275-11-3

The endogenous peptides of normal human serum extracted from the acetonitrile-insoluble precipitate using modified aqueous buffer with analysis by LC-ESI-Paul ion trap and Qq-TOF.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1559-0275-11-3

“Product Ion Monitoring” Assay for Prostate-Specific Antigen in Serum Using a Linear Ion-Trap

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1559-0275-11-3

Characterization of the human blood plasma proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1559-0275-11-3

Maternal Plasma DNA Sequencing Reveals the Genome-Wide Genetic and Mutational Profile of the Fetus

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015845

Mast cell-derived exosomes activate endothelial cells to secrete plasminogen activator inhibitor type 1

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24476026

12 December 2020

inferred from PubMed ID database lookup

Long-term stability of circulating nucleosomes in serum

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24476026

12 December 2020

inferred from PubMed ID database lookup

Contribution of protein fractionation to depth of analysis of the serum and plasma proteomes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24476026

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/1559-0275-11-3

1 reference

Dimensions Publication ID

28 July 2017

0 references

1 reference

28 July 2017

1 reference