(Q33591409)

English

Evolution of the human immunodeficiency virus type 2 envelope in the first years of infection is associated with the dynamics of the neutralizing antibody response

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Evolution of the human immunodeficiency virus type 2 envelope in the first years of infection is associated with the dynamics of the neutralizing antibody response (English)

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Rita Almeida Calado

object named as

Rita Calado

2

0 references

Carlos Família

object named as

Carlos Família

9

0 references

object named as

Cheila Rocha

1

0 references

object named as

Inês Bártolo

5

0 references

José Maria Marcelino

object named as

José Maria Marcelino

4

0 references

object named as

Pedro Borrego

3

0 references

object named as

Helena Barroso

13

0 references

Perpétua Gomes

object named as

Perpétua Gomes

8

0 references

Alexandre Quintas

object named as

Alexandre Quintas

10

0 references

object named as

Nuno Taveira

14

0 references

12

object named as

Thomas Leitner

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

author name string

Lino Rosado

6

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Patrícia Cavaco-Silva

7

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Helena Skar

11

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

publication date

24 October 2013

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

10

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

110

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

https://scigraph.springernature.com/pub.10.1186/1742-4690-10-110

0 references

Resistance to antibody neutralization in HIV-2 infection occurs in late stage disease and is associated with X4 tropism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Epitope mapping of broadly neutralizing HIV-2 human monoclonal antibodies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

A short segment of the HIV-1 gp120 V1/V2 region is a major determinant of resistance to V1/V2 neutralizing antibodies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Baseline susceptibility of primary HIV-2 to entry inhibitors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Molecular determinants of HIV-2 R5-X4 tropism in the V3 loop: development of a new genotypic tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Potent intratype neutralizing activity distinguishes human immunodeficiency virus type 2 (HIV-2) from HIV-1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Potent autologous and heterologous neutralizing antibody responses occur in HIV-2 infection across a broad range of infection outcomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Broad and potent neutralizing antibody responses elicited in natural HIV-2 infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Update on human immunodeficiency virus (HIV)-2 infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Potent and broadly reactive HIV-2 neutralizing antibodies elicited by a vaccinia virus vector prime-C2V3C3 polypeptide boost immunization strategy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Undetectable plasma viral load predicts normal survival in HIV-2-infected people in a West African village

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

HIV-2 genetic evolution in patients with advanced disease is faster than that in matched HIV-1 patients

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Restricted genetic diversity of HIV-1 subtype C envelope glycoprotein from perinatally infected Zambian infants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Escape from autologous neutralizing antibodies in acute/early subtype C HIV-1 infection requires multiple pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Dynamic correlation between intrahost HIV-1 quasispecies evolution and disease progression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

HIV-2: the forgotten AIDS virus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

A call for randomized controlled trials of antiretroviral therapy for HIV-2 infection in West Africa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Autologous neutralizing humoral immunity and evolution of the viral envelope in the course of subtype B human immunodeficiency virus type 1 infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Comparison of viro-immunological marker changes between HIV-1 and HIV-2-infected patients in France

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

BEAST: Bayesian evolutionary analysis by sampling trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Clustal W and Clustal X version 2.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Comparison of heterologous neutralizing antibody responses of human immunodeficiency virus type 1 (HIV-1)- and HIV-2-infected Senegalese patients: distinct patterns of breadth and magnitude distinguish HIV-1 and HIV-2 infections

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Characterization of HIV-1 subtype C envelope glycoproteins from perinatally infected children with different courses of disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Increased frequency of circulating CCR5+ CD4+ T cells in human immunodeficiency virus type 2 infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

A simple and robust statistical test for detecting the presence of recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Neutralization escape variants of human immunodeficiency virus type 1 are transmitted from mother to infant

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Neutralizing antibody responses drive the evolution of human immunodeficiency virus type 1 envelope during recent HIV infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Evolution of human immunodeficiency virus type 2 coreceptor usage, autologous neutralization, envelope sequence and glycosylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Evolution of subtype C HIV-1 Env in a slowly progressing Zambian infant

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Application of phylogenetic networks in evolutionary studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Datamonkey: rapid detection of selective pressure on individual sites of codon alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Not so different after all: a comparison of methods for detecting amino acid sites under selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Phylogenetic demonstration of two cases of perinatal human immunodeficiency virus type 2 infection diagnosed in adulthood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Tracking global patterns of N-linked glycosylation site variation in highly variable viral glycoproteins: HIV, SIV, and HCV envelopes and influenza hemagglutinin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

SWISS-MODEL: An automated protein homology-modeling server

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Antibody neutralization and escape by HIV-1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Low plasma human immunodeficiency virus type 2 viral load is independent of proviral load: low virus production in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Characterization of neutralizing sites in the second variable and fourth variable region in gp125 and a conserved region in gp36 of human immunodeficiency virus type 2.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

MODELTEST: testing the model of DNA substitution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Virological and molecular demonstration of human immunodeficiency virus type 2 vertical transmission

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Vertical transmission of HIV-2.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Serial CD4 and CD8 T-lymphocyte counts and associated mortality in an HIV-2-infected population in Guinea-Bissau

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Location, exposure, and conservation of neutralizing and nonneutralizing epitopes on human immunodeficiency virus type 2 SU glycoprotein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Genetic differences between blood- and brain-derived viral sequences from human immunodeficiency virus type 1-infected patients: evidence of conserved elements in the V3 region of the envelope protein of brain-derived sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Reduced rate of disease development after HIV-2 infection as compared to HIV-1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

21 June 2018

Identification of a new HIV-2 subtype based on phylogenetic analysis of full-length genomic sequence.

1 reference

https://api.crossref.org/works/10.1186%2F1742-4690-10-110

21 January 2018

Identification of a highly divergent HIV type 2 and proposal for a change in HIV type 2 classification

1 reference

https://api.crossref.org/works/10.1186%2F1742-4690-10-110

21 January 2018

Mortality of HIV-1, HIV-2 and HIV-1/HIV-2 dually infected patients in a clinic-based cohort in The Gambia

1 reference

https://api.crossref.org/works/10.1186%2F1742-4690-10-110

21 January 2018

Factors associated with clinical progression in HIV-2 infected-patients: the French ANRS cohort

1 reference

https://api.crossref.org/works/10.1186%2F1742-4690-10-110

21 January 2018

Rate of decline of percentage CD4+ cells is faster in HIV-1 than in HIV-2 infection

1 reference

https://api.crossref.org/works/10.1186%2F1742-4690-10-110

21 January 2018

Plasma viral load in HIV-1 and HIV-2 singly and dually infected individuals in Guinea-Bissau, West Africa: significantly lower plasma virus set point in HIV-2 infection than in HIV-1 infection

1 reference

https://api.crossref.org/works/10.1186%2F1742-4690-10-110

21 January 2018

Envelope-specific antibody response in HIV-2 infection: C2V3C3-specific IgG response is associated with disease progression

1 reference

https://api.crossref.org/works/10.1186%2F1742-4690-10-110

21 January 2018

The role of the humoral immune response in the molecular evolution of the envelope C2, V3 and C3 regions in chronically HIV-2 infected patients

1 reference

https://api.crossref.org/works/10.1186%2F1742-4690-10-110

21 January 2018

Assessment of mother-to-child HIV-1 and HIV-2 transmission: an AIDS reference laboratory collaborative study.

1 reference

https://api.crossref.org/works/10.1186%2F1742-4690-10-110

21 January 2018

Mother-to-child transmission of HIV-2 infection from 1986 to 2007 in the ANRS French Perinatal Cohort EPF-CO1.

1 reference

https://api.crossref.org/works/10.1186%2F1742-4690-10-110

21 January 2018

Small amino acid changes in the V3 loop of human immunodeficiency virus type 2 determines the coreceptor usage for CXCR4 and CCR5.

1 reference

https://api.crossref.org/works/10.1186%2F1742-4690-10-110

21 January 2018

Clinical progression in early and late stages of disease in a cohort of individuals infected with human immunodeficiency virus-2 in Guinea-Bissau

1 reference

https://api.crossref.org/works/10.1186%2F1742-4690-10-110

21 January 2018

In vitro replication capacity of HIV-2 variants from long-term aviremic individuals

1 reference

https://api.crossref.org/works/10.1186%2F1742-4690-10-110

21 January 2018

Perinatally acquired HIV-2 infection diagnosed at 15 and 24 years of age

1 reference

https://api.crossref.org/works/10.1186%2F1742-4690-10-110

21 January 2018

Two neutralizing domains in the V3 region in the envelope glycoprotein gp125 of HIV type 2.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

31 October 2018

Genetic variation in mother???child acute seroconverter pairs from Zambia

1 reference

https://api.crossref.org/works/10.1186%2F1742-4690-10-110

21 January 2018

Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016255

31 October 2018

Low peripheral blood viral HIV-2 RNA in individuals with high CD4 percentage differentiates HIV-2 from HIV-1 infection

1 reference

https://pubmed.ncbi.nlm.nih.gov/24156513

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

https://pubmed.ncbi.nlm.nih.gov/24156513

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HIV-1 and HIV-2 double infection in French homosexual male with AIDS-related complex (Paris, 1985)

1 reference

https://pubmed.ncbi.nlm.nih.gov/24156513

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Autologous neutralizing antibodies prevail in HIV-2 but not in HIV-1 infection

1 reference

https://pubmed.ncbi.nlm.nih.gov/24156513

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HIV-1 and HIV-2 AIDS in African patients living in Paris

1 reference

https://pubmed.ncbi.nlm.nih.gov/24156513

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1742-4690-10-110

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Dimensions Publication ID

1 reference

https://scigraph.springernature.com/pub.10.1186/1742-4690-10-110

9 September 2019

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

ResearchGate publication ID

0 references

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