(Q33592868)

28 July 2017

title

Genomic diversity and introgression in O. sativa reveal the impact of domestication and breeding on the rice genome (English)

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28 July 2017

1 reference

2

Mark Wright

1 reference

28 July 2017

Chih-Wei Tung

9

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Jennifer Kimball

object named as

Jennifer Kimball

3

0 references

Carlos D. Bustamante

11

object named as

Carlos D Bustamante

1 reference

28 July 2017

Keyan Zhao

1

1 reference

28 July 2017

Georgia Eizenga

4

1 reference

28 July 2017

Anna McClung

5

1 reference

28 July 2017

Michael Kovach

6

1 reference

28 July 2017

Wricha Tyagi

7

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28 July 2017

Md Liakat Ali

8

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28 July 2017

Andy Reynolds

10

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28 July 2017

Susan R McCouch

12

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28 July 2017

language of work or name

English

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publication date

24 May 2010

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28 July 2017

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28 July 2017

volume

5

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28 July 2017

issue

5

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28 July 2017

page(s)

e10780

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Creative Commons CC0 License

28 July 2017

copyright license

start time

24 May 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

cites work

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A multilocus gene genealogy concordant with host preference indicates segregation of a new species, Magnaporthe oryzae, from M. grisea

21 June 2018

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ALCHEMY: a reliable method for automated SNP genotype calling for small batch sizes and highly homozygous populations

21 June 2018

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Association mapping of stigma and spikelet characteristics in rice (Oryza sativa L.).

21 June 2018

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The origin and evolution of fragrance in rice (Oryza sativa L.).

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2875394

Genetic properties of the maize nested association mapping population

21 June 2018

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The genetic architecture of maize flowering time.

21 June 2018

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Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

21 June 2018

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Evolutionary history of GS3, a gene conferring grain length in rice

21 June 2018

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Not just a grain of rice: the quest for quality.

21 June 2018

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The emergence of whole genome association scans in barley

21 June 2018

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Rice Pi5-mediated resistance to Magnaporthe oryzae requires the presence of two coiled-coil-nucleotide-binding-leucine-rich repeat genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2875394

Two adjacent nucleotide-binding site-leucine-rich repeat class genes are required to confer Pikm-specific rice blast resistance

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2875394

New insights into the history of rice domestication

21 June 2018

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The extent of linkage disequilibrium in rice (Oryza sativa L.).

21 June 2018

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The blast resistance gene Pi37 encodes a nucleotide binding site leucine-rich repeat protein and is a member of a resistance gene cluster on rice chromosome 1.

21 June 2018

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Genome-wide patterns of nucleotide polymorphism in domesticated rice

21 June 2018

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Global dissemination of a single mutation conferring white pericarp in rice

21 June 2018

1 reference

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A Markov chain Monte Carlo approach for joint inference of population structure and inbreeding rates from multilocus genotype data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2875394

An Arabidopsis example of association mapping in structured samples

21 June 2018

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Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties

21 June 2018

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GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein

21 June 2018

1 reference

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The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2875394

A unified mixed-model method for association mapping that accounts for multiple levels of relatedness

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2875394

Genome-wide association mapping in Arabidopsis identifies previously known flowering time and pathogen resistance genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2875394

Mapping by admixture linkage disequilibrium: advances, limitations and guidelines

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2875394

Genetic structure and diversity in Oryza sativa L

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2875394

An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2875394

Population structure and its effect on haplotype diversity and linkage disequilibrium surrounding the xa5 locus of rice (Oryza sativa L.).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2875394

Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2875394

The genes of the Green Revolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2875394

Semidwarf (sd-1), "green revolution" rice, contains a defective gibberellin 20-oxidase gene

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2875394

Green revolution: a mutant gibberellin-synthesis gene in rice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2875394

tA single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2875394

Inference of population structure using multilocus genotype data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2875394

The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2875394

RFLP mapping of genes conferring complete and partial resistance to blast in a durably resistant rice cultivar

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2875394

Genome-wide analysis of transposon insertion polymorphisms reveals intraspecific variation in cultivated rice.

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010780

The Interpretation of Population Structure by F-Statistics with Special Regard to Systems of Mating

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010780

Control of a key transition from prostrate to erect growth in rice domestication

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010780

Deletion in a gene associated with grain size increased yields during rice domestication

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010780

A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010780

An SNP caused loss of seed shattering during rice domestication

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010780

Identification and functional analysis of a locus for improvement of lodging resistance in rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010780

The amylose content in rice endosperm is related to the post-transcriptional regulation of the waxy gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0010780

ESTIMATING F-STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2875394

Identification of SNPs in the waxy gene among glutinous rice cultivars and their evolutionary significance during the domestication process of rice

30 October 2018

1 reference

12 December 2020

Large-scale DNA polymorphism study of Oryza sativa and O. rufipogon reveals the origin and divergence of Asian rice

1 reference

12 December 2020

The gene for fragrance in rice

1 reference

12 December 2020

Genome studies and molecular genetics-from sequence to crops: genomics comes of age

1 reference

12 December 2020

Rice Pi-ta gene Confers Resistance to the Major Pathotypes of the Rice Blast Fungus in the United States

1 reference

12 December 2020

Natural Variation at the Pi-ta Rice Blast Resistance Locus

1 reference

12 December 2020

Genetic diversity and differentiation of indica and japonica rice detected by RFLP analysis

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0010780

Identifiers

DOI

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28 July 2017

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28 July 2017

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