(Q33602996)

28 July 2017

title

In vitro vs in silico detected SNPs for the development of a genotyping array: what can we learn from a non-model species? (English)

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28 July 2017

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8

Christophe Plomion

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Camille Lepoittevin

object named as

Camille Lepoittevin

1

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Luc Harvengt

object named as

Luc Harvengt

7

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Barbara Vornam

6

object named as

Barbara Vornam

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28 July 2017

Jean-Marc Frigerio

2

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28 July 2017

Pauline Garnier-Géré

3

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28 July 2017

Franck Salin

4

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28 July 2017

María-Teresa Cervera

5

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28 July 2017

language of work or name

English

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publication date

9 June 2010

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28 July 2017

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28 July 2017

volume

5

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28 July 2017

issue

6

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28 July 2017

page(s)

e11034

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Creative Commons Attribution 4.0 International

28 July 2017

copyright license

start time

9 June 2010

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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21 June 2018

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Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay

21 June 2018

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21 June 2018

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Medium- to high-throughput SNP genotyping using VeraCode microbeads

21 June 2018

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Quality assessment parameters for EST-derived SNPs from catfish

21 June 2018

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21 June 2018

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Performance of amplified DNA in an Illumina GoldenGate BeadArray assay

21 June 2018

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SNP high-throughput screening in grapevine using the SNPlex genotyping system

21 June 2018

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Enhancing genetic mapping of complex genomes through the design of highly-multiplexed SNP arrays: application to the large and unsequenced genomes of white spruce and black spruce

21 June 2018

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"Contrasting patterns of selection at Pinus pinaster Ait. Drought stress candidate genes as revealed by genetic differentiation analyses".

21 June 2018

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Large-scale evaluation of candidate genes identifies associations between VEGF polymorphisms and bladder cancer risk

21 June 2018

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Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties

21 June 2018

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Application of genome-wide single nucleotide polymorphism typing: simple association and beyond

21 June 2018

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Automated SNP detection from a large collection of white spruce expressed sequences: contributing factors and approaches for the categorization of SNPs

21 June 2018

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An evaluation of the performance of tag SNPs derived from HapMap in a Caucasian population

21 June 2018

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Genotyping errors: causes, consequences and solutions

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882948

SNPs in forensic genetics: a review on SNP typing methodologies

21 June 2018

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Toward genome-wide SNP genotyping

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882948

High-throughput SNP genotyping on universal bead arrays

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882948

How to track and assess genotyping errors in population genetics studies.

21 June 2018

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Single-nucleotide mutations for plant functional genomics

21 June 2018

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Large-scale identification and analysis of genome-wide single-nucleotide polymorphisms for mapping in Arabidopsis thaliana

21 June 2018

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Mining for single nucleotide polymorphisms and insertions/deletions in maize expressed sequence tag data

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882948

Effects of genotyping errors, missing values and segregation distortion in molecular marker data on the construction of linkage maps

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882948

Applications of single nucleotide polymorphisms in crop genetics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882948

Detection and integration of genotyping errors in statistical genetics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882948

A transmission/disequilibrium test that allows for genotyping errors in the analysis of single-nucleotide polymorphism data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882948

The effect that genotyping errors have on the robustness of common linkage-disequilibrium measures

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882948

Linkage analysis in the presence of errors IV: joint pseudomarker analysis of linkage and/or linkage disequilibrium on a mixture of pedigrees and singletons when the mode of inheritance cannot be accurately specified

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882948

Mining SNPs from EST databases

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882948

PedCheck: a program for identification of genotype incompatibilities in linkage analysis

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882948

Basic local alignment search tool

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882948

Automated SNP detection in expressed sequence tags: statistical considerations and application to maritime pine sequences.

21 June 2018

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Highly parallel SNP genotyping

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0011034

A general approach to single-nucleotide polymorphism discovery.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0011034

Estimating genotyping error rates from Mendelian errors in SNP array genotypes and their impact on inference.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0011034

Estimation of genotype error rate using samples with pedigree information--an application on the GeneChip Mapping 10K array

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0011034

The impact of genotyping error on family-based analysis of quantitative traits

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0011034

Power and sample size calculations for case-control genetic association tests when errors are present: application to single nucleotide polymorphisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0011034

What SNP genotyping errors are most costly for genetic association studies?

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0011034

Allowing for genotyping error in analysis of unmatched case-control studies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0011034

Nucleotide variation in genes involved in wood formation in two pine species

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20543950

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

BeadArray technology: enabling an accurate, cost-effective approach to high-throughput genotyping

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20543950

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

High-throughput genotyping with the GoldenGate assay in the complex genome of soybean

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20543950

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0011034

1 reference

28 July 2017

0 references

1 reference

28 July 2017

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