(Q33611328)

28 July 2017

title

Duplication, divergence and persistence in the Phytochrome photoreceptor gene family of cottons (Gossypium spp.). (English)

1 reference

28 July 2017

main subject

photoreceptor protein

0 references

author name string

Ibrokhim Y Abdurakhmonov

1

1 reference

28 July 2017

Zabardast T Buriev

2

1 reference

28 July 2017

Carla Jo Logan-Young

3

1 reference

28 July 2017

Abdusattor Abdukarimov

4

1 reference

28 July 2017

Alan E Pepper

5

1 reference

28 July 2017

publication date

20 June 2010

1 reference

28 July 2017

1 reference

28 July 2017

volume

10

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28 July 2017

page(s)

119

1 reference

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

28 July 2017

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21 June 2018

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The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana

21 June 2018

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21 June 2018

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New World tetraploid cottons contain Old World cytoplasm

21 June 2018

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21 June 2018

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21 June 2018

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Photoreceptor regulation of CONSTANS protein in photoperiodic flowering

21 June 2018

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21 June 2018

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Characterization of the requirements for localization of phytochrome B to nuclear bodies

21 June 2018

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Phytochromes B, D, and E act redundantly to control multiple physiological responses in Arabidopsis

21 June 2018

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21 June 2018

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21 June 2018

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Evolution of the angiosperms: calibrating the family tree

21 June 2018

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Birth and death of duplicated genes in completely sequenced eukaryotes

21 June 2018

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Inter-domain crosstalk in the phytochrome molecules

21 June 2018

1 reference

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The evolutionary fate and consequences of duplicate genes

21 June 2018

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Purifying selection and birth-and-death evolution in the ubiquitin gene family

21 June 2018

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Photoreceptors in signal transduction. Pathways of enlightenment

21 June 2018

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The probability of duplicate gene preservation by subfunctionalization

21 June 2018

1 reference

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Duplicated genes evolve independently after polyploid formation in cotton

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Preservation of duplicate genes by complementary, degenerative mutations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Phytochromes and cryptochromes in the entrainment of the Arabidopsis circadian clock.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Genetic interactions between phytochrome A, phytochrome B, and cryptochrome 1 during Arabidopsis development

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Evidence that the phytochrome gene family in black cottonwood has one PHYA locus and two PHYB loci but lacks members of the PHYC/F and PHYE subfamilies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

21 June 2018

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

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Antagonistic but complementary actions of phytochromes A and B allow seedling de-etiolation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

The sorghum photoperiod sensitivity gene, Ma3, encodes a phytochrome B.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

The phytochrome apoprotein family in Arabidopsis is encoded by five genes: the sequences and expression of PHYD and PHYE.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Photosensory perception and signal transduction in plants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

The neighbor-joining method: a new method for reconstructing phylogenetic trees

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

High fidelity DNA synthesis by the Thermus aquaticus DNA polymerase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Phytochrome: a light-activated molecular switch that regulates plant gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Phylogenetic relationships of B-related phytochromes in the Brassicaceae: Redundancy and the persistence of phytochrome D.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Discordant longitudinal clines in flowering time and phytochrome C in Arabidopsis thaliana

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Nucleotide polymorphism and phenotypic associations within and around the phytochrome B2 Locus in European aspen (Populus tremula, Salicaceae).

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Phytochrome B in the mesophyll delays flowering by suppressing FLOWERING LOCUS T expression in Arabidopsis vascular bundles.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Phytochrome evolution in green and nongreen plants.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Phytochrome phosphorylation modulates light signaling by influencing the protein-protein interaction.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

RDP2: recombination detection and analysis from sequence alignments.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Molecular evolution of the phytochrome gene family in sorghum: changing rates of synonymous and replacement evolution

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Mutant analyses define multiple roles for phytochrome C in Arabidopsis photomorphogenesis

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Isolation and characterization of phyC mutants in Arabidopsis reveals complex crosstalk between phytochrome signaling pathways.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Rate variation among nuclear genes and the age of polyploidy in Gossypium

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Phytochrome A mediates blue light and UV-A-dependent chloroplast gene transcription in green leaves.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Cryptochromes are required for phytochrome signaling to the circadian clock but not for rhythmicity

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Overexpressed phytochrome C has similar photosensory specificity to phytochrome B but a distinctive capacity to enhance primary leaf expansion.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

The phytochrome gene family in tomato includes a novel subfamily

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

The PHYC gene of Arabidopsis. Absence of the third intron found in PHYA and PHYB.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Divergence of the phytochrome gene family predates angiosperm evolution and suggests that Selaginella and Equisetum arose prior to Psilotum

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3095280

Phytochrome D acts in the shade-avoidance syndrome in Arabidopsis by controlling elongation growth and flowering time

30 October 2018

1 reference

12 December 2020

A photoperiod-insensitive barley line contains a light-labile phytochrome B

1 reference

12 December 2020

The phytochrome gene family in tomato and the rapid differential evolution of this family in angiosperms

1 reference

12 December 2020

Phytochromes confer the photoperiodic control of flowering in rice (a short-day plant)

1 reference

12 December 2020

CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis

1 reference

12 December 2020

Phytochrome A Mediates the Promotion of Seed Germination by Very Low Fluences of Light and Canopy Shade Light in Arabidopsis

1 reference

12 December 2020

The Induction of Seed Germination in Arabidopsis thaliana Is Regulated Principally by Phytochrome B and Secondarily by Phytochrome A

1 reference

12 December 2020

Phytochrome A and Phytochrome B Have Overlapping but Distinct Functions in Arabidopsis Development

1 reference

12 December 2020

PCR-mediated recombination in amplification products derived from polyploid cotton

1 reference

12 December 2020

Phytochrome control of flowering is temperature sensitive and correlates with expression of the floral integratorFT

1 reference

12 December 2020

Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes

1 reference

12 December 2020

Novel phytochrome sequences in Arabidopsis thaliana: structure, evolution, and differential expression of a plant regulatory photoreceptor family

1 reference

12 December 2020

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

12 December 2020

Tomato contains two differentially expressed genes encoding B-type phytochromes, neither of which can be considered an ortholog of Arabidopsis phytochrome B

1 reference

12 December 2020

A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers

1 reference

12 December 2020

dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics

1 reference

12 December 2020

Phytochrome E influences internode elongation and flowering time in Arabidopsis

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2229-10-119

1 reference

Dimensions Publication ID

28 July 2017

0 references

1 reference

28 July 2017

1 reference