(Q33611959)

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Soybean (Glycine max) expansin gene superfamily origins: segmental and tandem duplication events followed by divergent selection among subfamilies

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Europe PubMed Central

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28 July 2017

Soybean (Glycine max) expansin gene superfamily origins: segmental and tandem duplication events followed by divergent selection among subfamilies (English)

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28 July 2017

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13 June 2020

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Yan Zhu

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13 June 2020

Ningning Wu

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13 June 2020

Wanlu Song

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13 June 2020

Guangjun Yin

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13 June 2020

Yajuan Qin

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13 June 2020

Yueming Yan

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13 June 2020

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BMC Plant Biology

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13 June 2020

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13 June 2020

The large soybean (Glycine max) WRKY TF family expanded by segmental duplication events and subsequent divergent selection among subgroups

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21 June 2018

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

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21 June 2018

Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss

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21 June 2018

RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome

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21 June 2018

Genome sequence of the palaeopolyploid soybean

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21 June 2018

Divergence in function and expression of the NOD26-like intrinsic proteins in plants

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21 June 2018

Duplicate genes increase expression diversity in closely related species and allopolyploids

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21 June 2018

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21 June 2018

Crystal structure and activity of Bacillus subtilis YoaJ (EXLX1), a bacterial expansin that promotes root colonization

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21 June 2018

The SWISS-MODEL Repository and associated resources

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21 June 2018

Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps

1 reference

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21 June 2018

Identification and analysis of evolutionary selection pressures acting at the molecular level in five forkhead subfamilies

1 reference

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21 June 2018

Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli

1 reference

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21 June 2018

A comprehensive transcriptional profiling of the WRKY gene family in rice under various abiotic and phytohormone treatments

1 reference

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21 June 2018

Consequences of genome duplication

1 reference

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21 June 2018

PAML 4: phylogenetic analysis by maximum likelihood

1 reference

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21 June 2018

Spatial distribution and temporal variation of the rice silicon transporter Lsi1.

1 reference

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21 June 2018

Functional divergence after gene duplication and sequence-structure relationship: a case study of G-protein alpha subunits.

1 reference

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21 June 2018

Crystal structure and activities of EXPB1 (Zea m 1), a beta-expansin and group-1 pollen allergen from maize

1 reference

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21 June 2018

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

1 reference

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21 June 2018

Genome histories clarify evolution of the expansin superfamily: new insights from the poplar genome and pine ESTs.

1 reference

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21 June 2018

The expansin superfamily

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4021193

21 June 2018

The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling

1 reference

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21 June 2018

Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

1 reference

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21 June 2018

Modeling gene and genome duplications in eukaryotes

1 reference

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21 June 2018

Bayes empirical bayes inference of amino acid sites under positive selection

1 reference

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21 June 2018

Changes in expansin activity and gene expression during ethylene-promoted leaflet abscission in Sambucus nigra.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4021193

21 June 2018

The Genomes of Oryza sativa: a history of duplications

1 reference

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21 June 2018

Rapid evolution of expression and regulatory divergences after yeast gene duplication

1 reference

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21 June 2018

Genomic organization of the Neurospora crassa gsn gene: possible involvement of the STRE and HSE elements in the modulation of transcription during heat shock.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4021193

21 June 2018

Expansins abundant in secondary xylem belong to subgroup A of the alpha-expansin gene family.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4021193

21 June 2018

Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4021193

21 June 2018

The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4021193

21 June 2018

Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4021193

21 June 2018

A role for expansins in dehydration and rehydration of the resurrection plant Craterostigma plantagineum

1 reference

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21 June 2018

The early stages of duplicate gene evolution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4021193

21 June 2018

Purification and characterization of four beta-expansins (Zea m 1 isoforms) from maize pollen

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4021193

21 June 2018

Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4021193

21 June 2018

Expression of an expansin gene is correlated with root elongation in soybean.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4021193

21 June 2018

A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome

1 reference

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21 June 2018

The growing world of expansins.

1 reference

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21 June 2018

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21 June 2018

Pollination modulates expression of the PPAL gene, a pistil-specific beta-expansin

1 reference

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21 June 2018

PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences.

1 reference

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21 June 2018

Expression of beta-expansins is correlated with internodal elongation in deepwater rice

1 reference

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21 June 2018

Two endogenous proteins that induce cell wall extension in plants

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21 June 2018

Growth maintenance of the maize primary root at low water potentials involves increases in cell-wall extension properties, expansin activity, and wall susceptibility to expansins

1 reference

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21 June 2018

Expansin mode of action on cell walls. Analysis of wall hydrolysis, stress relaxation, and binding

1 reference

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21 June 2018

Polyploid Incidence and Evolution

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21 June 2018

Expression of an expansin is associated with endosperm weakening during tomato seed germination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4021193

21 June 2018

The evolutionary fate and consequences of duplicate genes

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21 June 2018

Loosening of plant cell walls by expansins

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21 June 2018

Submergence induces expansin gene expression in flooding-tolerant Rumex palustris and not in flooding-intolerant R. acetosa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4021193

21 June 2018

New genes and new biological roles for expansins

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21 June 2018

Auxin-regulated genes encoding cell wall-modifying proteins are expressed during early tomato fruit growth

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4021193

21 June 2018

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

1 reference

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21 June 2018

The probability of duplicate gene preservation by subfunctionalization

1 reference

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21 June 2018

Preservation of duplicate genes by complementary, degenerative mutations

1 reference

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21 June 2018

Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor

1 reference

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21 June 2018

PAML: a program package for phylogenetic analysis by maximum likelihood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4021193

21 June 2018

Expression of expansin genes is correlated with growth in deepwater rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4021193

21 June 2018

Group I allergens of grass pollen as cell wall-loosening agents

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21 June 2018

Rapid induction by wounding and bacterial infection of an S gene family receptor-like kinase gene in Brassica oleracea.

1 reference

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21 June 2018

Phytohormone control of the tobacco anionic peroxidase promoter

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21 June 2018

The G-box: a ubiquitous regulatory DNA element in plants bound by the GBF family of bZIP proteins

1 reference

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21 June 2018

The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences

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21 June 2018

Two auxin-responsive domains interact positively to induce expression of the early indoleacetic acid-inducible gene PS-IAA4/5.

1 reference

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21 June 2018

The neighbor-joining method: a new method for reconstructing phylogenetic trees

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21 June 2018

Molecular characterization and genetic mapping of two clusters of genes encoding chlorophyll a/b-binding proteins in Lycopersicon esculentum (tomato).

1 reference

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21 June 2018

A phenylalanine ammonia-lyase gene from parsley: structure, regulation and identification of elicitor and light responsive cis-acting elements.

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21 June 2018

Regulation and interaction of multiple protein factors with the proximal promoter regions of a rice high pI alpha-amylase gene

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21 June 2018

Nomenclature for members of the expansin superfamily of genes and proteins.

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21 January 2018

Grass group I pollen allergens (beta-expansins) lack proteinase activity and do not cause wall loosening via proteolysis

1 reference

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21 January 2018

Relaxation in a high-stress environment: the molecular bases of extensible cell walls and cell enlargement

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21 January 2018

Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth

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21 January 2018

Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome.

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21 January 2018

Ancestral multipartite units in light-responsive plant promoters have structural features correlating with specific phototransduction pathways

1 reference

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21 January 2018

Expansins are conserved in conifers and expressed in hypocotyls in response to exogenous auxin

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21 January 2018

Arabidopsis DNA encoding two desiccation-responsive rd29 genes.

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21 January 2018

Expansins and Internodal Growth of Deepwater Rice

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21 January 2018

Expression of alpha-expansin genes in young seedlings of rice (Oryza sativa L.).

1 reference

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21 January 2018

Alpha-expansins in the semiaquatic ferns Marsilea quadrifolia and Regnellidium diphyllum: evolutionary aspects and physiological role in rachis elongation

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21 January 2018

Expression of alpha-expansin genes during root acclimations to O2 deficiency in Rumex palustris

1 reference

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21 January 2018

Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus japonicus

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21 January 2018

A simple statistical method for estimating type-II (cluster-specific) functional divergence of protein sequences.

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21 January 2018

An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants

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30 October 2018

Gibberellin biosynthesis and response during Arabidopsis seed germination

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30 October 2018

Expansins in deepwater rice internodes

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30 October 2018

Analysis and expression of the alpha-expansin and beta-expansin gene families in maize

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expansins in growing tomato leaves

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https://pubmed.ncbi.nlm.nih.gov/24720629

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular evolution of the MLO gene family in Oryza sativa and their functional divergence

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https://pubmed.ncbi.nlm.nih.gov/24720629

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The evolutionary position of subfunctionalization, downgraded

1 reference

https://pubmed.ncbi.nlm.nih.gov/24720629

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary selection pressure of forkhead domain and functional divergence

1 reference

https://pubmed.ncbi.nlm.nih.gov/24720629

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pericentromeric effects shape the patterns of divergence, retention, and expression of duplicated genes in the paleopolyploid soybean

1 reference

https://pubmed.ncbi.nlm.nih.gov/24720629

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The relationship between xyloglucan endotransglycosylase and in-vitro cell wall extension in cucumber hypocotyls

1 reference

https://pubmed.ncbi.nlm.nih.gov/24720629

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reference points for comparisons of two-dimensional maps of proteins from different human cell types defined in a pH scale where isoelectric points correlate with polypeptide compositions

1 reference

https://pubmed.ncbi.nlm.nih.gov/24720629

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene complexity and gene duplicability

1 reference

https://pubmed.ncbi.nlm.nih.gov/24720629

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/24720629

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2229-14-93

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24720629%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24720629%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24720629%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

ResearchGate publication ID

0 references

Sitelinks

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