(Q33614755)

28 July 2017

title

Requirement for canonical base pairing in the short pseudoknot structure of genomic hepatitis delta virus ribozyme (English)

1 reference

28 July 2017

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hepatitis delta virus

object named as

hepatitis delta virus

1 reference

F Nishikawa

1

1 reference

28 July 2017

S Nishikawa

series ordinal

2

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28 July 2017

language of work or name

English

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publication date

1 February 2000

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28 July 2017

published in

Nucleic Acids Research

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28 July 2017

volume

28

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28 July 2017

issue

4

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28 July 2017

page(s)

925-931

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A nested double pseudoknot is required for self-cleavage activity of both the genomic and antigenomic hepatitis delta virus ribozymes

28 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

Detailed analysis of stem I and its 5' and 3' neighbor regions in the trans-acting HDV ribozyme

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

Crystal structure of a hepatitis delta virus ribozyme

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

Self-cleaving ribozymes of hepatitis delta virus RNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

Crystal structure of a group I ribozyme domain: principles of RNA packing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

A pseudoknot ribozyme structure is active in vivo and required for hepatitis delta virus RNA replication

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

Core sequences and a cleavage site wobble pair required for HDV antigenomic ribozyme self-cleavage

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

Structural and sequence elements required for the self-cleaving activity of the hepatitis delta virus ribozyme

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

Identification of important bases in a single-stranded region (SSrC) of the hepatitis delta (delta) virus ribozyme

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

Two major tertiary folding transitions of the Tetrahymena catalytic RNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

Identification of phosphate oxygens that are important for self-cleavage activity of the HDV ribozyme by phosphorothioate substitution interference analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

The molecular biology of hepatitis delta virus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

Regulation of the hepatitis delta virus ribozymes: to cleave or not to cleave?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

Molecular cloning and sequencing of a human hepatitis delta (delta) virus RNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

Characterization of self-cleaving RNA sequences on the genome and antigenome of human hepatitis delta virus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

Human hepatitis delta virus RNA subfragments contain an autocleavage activity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

Antigenomic RNA of human hepatitis delta virus can undergo self-cleavage.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

A pseudoknot-like structure required for efficient self-cleavage of hepatitis delta virus RNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

Conformation of an RNA pseudoknot

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

Random mutations to evaluate the role of bases at two important single-stranded regions of genomic HDV ribozyme

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

Thermodynamics of folding of the RNA pseudoknot of the T4 gene 32 autoregulatory messenger RNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

Chemical probing studies of variants of the genomic hepatitis delta virus ribozyme by primer extension analysis

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

A three-dimensional model of hepatitis delta virus ribozyme based on biochemical and mutational analyses

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

RNA pseudoknots. Stability and loop size requirements

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102583

Relationships between apparent binding energies measured in site-directed mutagenesis experiments and energetics of binding and catalysis

30 October 2018

1 reference

12 December 2020

Kinetic intermediates in RNA folding

1 reference

12 December 2020

Systematic substitution of individual bases in two important single-stranded regions of the HDV ribozyme for evaluation of the role of specific bases

1 reference

12 December 2020

Predicting thermodynamic properties of RNA

1 reference

12 December 2020

Effect of structural modifications on the activity of the leadzyme

1 reference

12 December 2020

Folding of an mRNA pseudoknot required for stop codon readthrough: effects of mono- and divalent ions on stability

1 reference

12 December 2020

Kinetic intermediates trapped by native interactions in RNA folding

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/28.4.925

1 reference

release_ho7ipqnq2jb2dghhpl3g5f5w4q

28 July 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/ho7ipqnq2jb2dghhpl3g5f5w4q

24 November 2022

mapped directly with Wikidata item

PMC publication ID

102583

1 reference

28 July 2017

1 reference