(Q33622582)

28 July 2017

title

Genome graphs and the evolution of genome inference (English)

1 reference

28 July 2017

Jordan M Eizenga

3

0 references

Benedict Paten

series ordinal

1

object named as

Benedict Paten

1 reference

28 July 2017

Adam M Novak

2

1 reference

28 July 2017

Erik Garrison

series ordinal

4

1 reference

28 July 2017

publication date

30 March 2017

1 reference

28 July 2017

1 reference

28 July 2017

volume

27

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28 July 2017

issue

5

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28 July 2017

page(s)

665-676

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Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

28 July 2017

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1 reference

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21 June 2018

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21 June 2018

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Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics' GemCode Sequencing Data.

21 June 2018

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Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

21 June 2018

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Unequal representation of genetic variation across ancestry groups creates healthcare inequality in the application of precision medicine

21 June 2018

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deBGA: read alignment with de Bruijn graph-based seed and extension

21 June 2018

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Read mapping on de Bruijn graphs.

21 June 2018

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Chromosome-scale shotgun assembly using an in vitro method for long-range linkage

21 June 2018

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An integrated map of structural variation in 2,504 human genomes

21 June 2018

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A global reference for human genetic variation

21 June 2018

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Completing the human genome: the progress and challenge of satellite DNA assembly

21 June 2018

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Canonical, stable, general mapping using context schemes

21 June 2018

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Improved genome inference in the MHC using a population reference graph

21 June 2018

1 reference

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Mapping Bias Overestimates Reference Allele Frequencies at the HLA Genes in the 1000 Genomes Project Phase I Data

21 June 2018

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Improved data analysis for the MinION nanopore sequencer

21 June 2018

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Extending reference assembly models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

Building a pan-genome reference for a population

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

Resolving the complexity of the human genome using single-molecule sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

MOSAIK: a hash-based algorithm for accurate next-generation sequencing short-read mapping

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

Centromere reference models for human chromosomes X and Y satellite arrays.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

Efficient haplotype matching and storage using the positional Burrows-Wheeler transform (PBWT).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

Short read alignment with populations of genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

GenomeRing: alignment visualization based on SuperGenome coordinates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

Fast gapped-read alignment with Bowtie 2

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

Modernizing reference genome assemblies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

Genotype and SNP calling from next-generation sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

Fast and SNP-tolerant detection of complex variants and splicing in short reads

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

Computational methods for discovering structural variation with next-generation sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

Next generation disparities in human genomics: concerns and remedies

21 June 2018

1 reference

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Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

Simultaneous alignment of short reads against multiple genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

Maximum likelihood genome assembly

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

The Sequence Alignment/Map format and SAMtools

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

The diploid genome sequence of an individual human

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

Finishing the euchromatic sequence of the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

Multiple sequence alignment using partial order graphs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

An Eulerian path approach to DNA fragment assembly

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

Initial sequencing and analysis of the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

dbSNP: the NCBI database of genetic variation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

Recombination and gene flux caused by gene conversion and crossing over in inversion heterokaryotypes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

Homology between human and simian repeated DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411762

Matching: A Well-Solved Class of Integer Linear Programs

21 June 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.214155.116

The future of personalized and precision perinatal medicine. Foreword

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.214155.116

De novo assembly and phasing of a Korean human genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.214155.116

Coordinates and Intervals in Graph-based Reference Genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.214155.116

Coordinates and intervals in graph-based reference genomes

21 January 2018

1 reference

12 December 2020

Modelling haplotypes with respect to reference cohort variation graphs

1 reference

12 December 2020

Superbubbles, Ultrabubbles, and Cacti.

1 reference

12 December 2020

A Flow Procedure for Linearization of Genome Sequence Graphs

1 reference

12 December 2020

Identifiers

DOI

10.1101/GR.214155.116

1 reference

28 July 2017

1 reference

28 July 2017

1 reference