(Q33628849)

28 July 2017

title

A comprehensive benchmark of kernel methods to extract protein-protein interactions from literature (English)

1 reference

protein-protein interaction

28 July 2017

main subject

1 reference

based on heuristic

inferred from title

computational benchmark

1 reference

4

0 references

Ulf Leser

series ordinal

5

object named as

Ulf Leser

1 reference

28 July 2017

Domonkos Tikk

1

1 reference

28 July 2017

Philippe Thomas

series ordinal

2

1 reference

28 July 2017

Peter Palaga

series ordinal

3

1 reference

28 July 2017

publication date

1 July 2010

1 reference

PLOS Computational Biology

28 July 2017

published in

1 reference

28 July 2017

volume

6

1 reference

28 July 2017

page(s)

e1000837

1 reference

Creative Commons Attribution 4.0 International

28 July 2017

copyright license

start time

1 July 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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1 reference

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Evaluation of linguistic features useful in extraction of interactions from PubMed; application to annotating known, high-throughput and predicted interactions in I2D

21 June 2018

1 reference

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A realistic assessment of methods for extracting gene/protein interactions from free text

21 June 2018

1 reference

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Bayesian inference of protein-protein interactions from biological literature

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2895635

Evaluating contributions of natural language parsers to protein-protein interaction extraction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2895635

Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies?

21 June 2018

1 reference

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All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2895635

Overview of the protein-protein interaction annotation extraction task of BioCreative II

21 June 2018

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Gene mention normalization and interaction extraction with context models and sentence motifs.

21 June 2018

1 reference

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OntoGene in BioCreative II

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2895635

Large-scale directional relationship extraction and resolution

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2895635

Integration of relational and hierarchical network information for protein function prediction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2895635

Integrating protein-protein interactions and text mining for protein function prediction

21 June 2018

1 reference

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Identifying gene-disease associations using centrality on a literature mined gene-interaction network

21 June 2018

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Comparative analysis of five protein-protein interaction corpora

21 June 2018

1 reference

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Protein networks in disease

21 June 2018

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Molecular and cellular approaches for the detection of protein-protein interactions: latest techniques and current limitations

21 June 2018

1 reference

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Biochemical approaches for discovering protein-protein interactions.

21 June 2018

1 reference

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OpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression

21 June 2018

1 reference

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Extracting interactions between proteins from the literature.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2895635

Kernel approaches for genic interaction extraction

21 June 2018

1 reference

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A human phenome-interactome network of protein complexes implicated in genetic disorders

21 June 2018

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21 June 2018

1 reference

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Benchmarking natural-language parsers for biological applications using dependency graphs.

21 June 2018

1 reference

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21 June 2018

1 reference

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Support vector machine implementations for classification & clustering

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2895635

Extraction of regulatory gene/protein networks from Medline

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2895635

Text mining for metabolic pathways, signaling cascades, and protein networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2895635

Literature mining and database annotation of protein phosphorylation using a rule-based system

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2895635

Protein complexes and functional modules in molecular networks

21 June 2018

1 reference

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How reliable are experimental protein-protein interaction data?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2895635

Mining MEDLINE: abstracts, sentences, or phrases?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2895635

A pragmatic information extraction strategy for gathering data on genetic interactions.

21 June 2018

1 reference

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Comparative experiments on learning information extractors for proteins and their interactions.

21 June 2018

1 reference

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Discovering patterns to extract protein-protein interactions from the literature: Part II.

21 January 2018

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RelEx--relation extraction using dependency parse trees.

21 January 2018

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Protein-protein interaction extraction by leveraging multiple kernels and parsers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000837

10.1371/JOURNAL.PCBI.1000837

21 January 2018

Identifiers

DOI

1 reference

journals/ploscb/TikkTPHL10

28 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

28 July 2017

1 reference