(Q33633619)

28 July 2017

title

Lateral transfer of genes and gene fragments in prokaryotes (English)

1 reference

28 July 2017

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1

1 reference

28 July 2017

Aaron E Darling

3

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Mark A. Ragan

object named as

Mark A Ragan

series ordinal

4

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author name string

Robert G Beiko

series ordinal

2

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28 July 2017

language of work or name

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4 November 2009

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Genome Biology and Evolution

28 July 2017

published in

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28 July 2017

volume

1

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28 July 2017

page(s)

429-438

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Lateral genetic transfer: open issues

28 July 2017

cites work

1 reference

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What antimicrobial resistance has taught us about horizontal gene transfer

21 June 2018

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Rapid pathway evolution facilitated by horizontal gene transfers across prokaryotic lineages

21 June 2018

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Are protein domains modules of lateral genetic transfer?

21 June 2018

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Darwinian evolution in the light of genomics

21 June 2018

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The Genome of Thermosipho africanus TCF52B: Lateral Genetic Connections to the Firmicutes and Archaea

21 June 2018

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The microbial engines that drive Earth's biogeochemical cycles.

21 June 2018

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Genome evolution in cyanobacteria: the stable core and the variable shell

21 June 2018

1 reference

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Evolution of acetoclastic methanogenesis in Methanosarcina via horizontal gene transfer from cellulolytic Clostridia

21 June 2018

1 reference

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Ancestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Detecting recombination in evolving nucleotide sequences

21 June 2018

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Emergence and resurgence of meticillin-resistant Staphylococcus aureus as a public-health threat

21 June 2018

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Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events

21 June 2018

1 reference

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Quantitative exploration of the occurrence of lateral gene transfer by using nitrogen fixation genes as a case study

21 June 2018

1 reference

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The fate of laterally transferred genes: life in the fast lane to adaptation or death

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Recombination between elongation factor 1alpha genes from distantly related archaeal lineages

21 June 2018

1 reference

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Toward Automatic Reconstruction of a Highly Resolved Tree of Life

21 June 2018

1 reference

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A simple and robust statistical test for detecting the presence of recombination

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Phylogenetic identification of lateral genetic transfer events

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Highways of gene sharing in prokaryotes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Horizontal gene transfer, genome innovation and evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

The cobweb of life revealed by genome-scale estimates of horizontal gene transfer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Statistical evaluation of pairwise protein sequence comparison with the Bayesian bootstrap

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Evolutionary origins of genomic repertoires in bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

A word-oriented approach to alignment validation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Biased biological functions of horizontally transferred genes in prokaryotic genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Pathogenomics of mobile genetic elements of toxigenic bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

A hybrid clustering approach to recognition of protein families in 114 microbial genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Comparative genomics of gene-family size in closely related bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

The balance of driving forces during genome evolution in prokaryotes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Prokaryotic evolution in light of gene transfer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Genome trees and the tree of life

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Likelihood-based tests of topologies in phylogenetics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

An approximately unbiased test of phylogenetic tree selection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

MRBAYES: Bayesian inference of phylogenetic trees

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

On surrogate methods for detecting lateral gene transfer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Interpreting the universal phylogenetic tree

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Detecting alien genes in bacterial genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Phylogenetic classification and the universal tree

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Horizontal gene transfer among genomes: the complexity hypothesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Analyzing the mosaic structure of genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Proposed acquisition of an animal protein domain by bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Nonautonomous transposable elements in prokaryotes and eukaryotes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: convergence or divergence by homologous recombination?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Dual multiple change-point model leads to more accurate recombination detection.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Does a tree-like phylogeny only exist at the tips in the prokaryotes?

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Gene duplication and biased functional retention of paralogs in bacterial genomes.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Inferring confidence sets of possibly misspecified gene trees.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Evolutionary implications of the frequent horizontal transfer of mismatch repair genes.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

Genomes in Flux: The Evolution of Archaeal and Proteobacterial Gene Content

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817436

A comparative synteny map of Burkholderia species links large-scale genome rearrangements to fine-scale nucleotide variation in prokaryotes

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20333212

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Horizontal transfer of the photosynthesis gene cluster and operon rearrangement in purple bacteria

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20333212

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Phylogenetic inference based on matrix representation of trees

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20333212

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/GBE/EVP044

1 reference

28 July 2017

1 reference

28 July 2017

1 reference