(Q33634609)

28 July 2017

title

Mechanisms of haplotype divergence at the RGA08 nucleotide-binding leucine-rich repeat gene locus in wild banana (Musa balbisiana) (English)

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28 July 2017

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Franc-Christophe Baurens

object named as

Franc-Christophe Baurens

1

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Mathieu Rouard

object named as

Mathieu Rouard

3

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Robert N G Miller

object named as

Robert N G Miller

5

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author name string

Stéphanie Bocs

2

1 reference

28 July 2017

Takashi Matsumoto

4

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28 July 2017

Marguerite Rodier-Goud

6

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28 July 2017

Didier MBéguié-A-MBéguié

7

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28 July 2017

Nabila Yahiaoui

8

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28 July 2017

publication date

16 July 2010

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28 July 2017

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28 July 2017

volume

10

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28 July 2017

page(s)

149

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The B73 Maize Genome: Complexity, Diversity, and Dynamics

28 July 2017

cites work

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14 July 2018

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14 July 2018

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14 July 2018

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Genomes, diversity and resistance gene analogues in Musa species.

14 July 2018

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A single Banana streak virus integration event in the banana genome as the origin of infectious endogenous pararetrovirus

14 July 2018

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Analysis of non-TIR NBS-LRR resistance gene analogs in Musa acuminata Colla: isolation, RFLP marker development, and physical mapping

14 July 2018

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Insights into the Musa genome: syntenic relationships to rice and between Musa species

14 July 2018

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14 July 2018

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Identification and characterization of nucleotide-binding site-leucine-rich repeat genes in the model plant Medicago truncatula

14 July 2018

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The blast resistance gene Pi37 encodes a nucleotide binding site leucine-rich repeat protein and is a member of a resistance gene cluster on rice chromosome 1.

14 July 2018

1 reference

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Contrasting rates of evolution in Pm3 loci from three wheat species and rice

14 July 2018

1 reference

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A BAC end view of the Musa acuminata genome

14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

14 July 2018

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LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons

14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

PAML 4: phylogenetic analysis by maximum likelihood

14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

14 July 2018

The plant immune system

1 reference

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Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Combined evidence annotation of transposable elements in genome sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

InterProScan: protein domains identifier

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Ancient haplotypes resulting from extensive molecular rearrangements in the wheat A genome have been maintained in species of three different ploidy levels

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Construction and characterization of a plant transformation-competent BIBAC library of the black Sigatoka-resistant banana Musa acuminata cv. Tuu Gia (AA).

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Multiple genetic processes result in heterogeneous rates of evolution within the major cluster disease resistance genes in lettuce

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Rapid recent growth and divergence of rice nuclear genomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Construction and characterization of a bacterial artificial chromosome library of banana (Musa acuminata Colla).

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Intraspecific violation of genetic colinearity and its implications in maize

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Ab initio gene finding in Drosophila genomic DNA

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Receptor-like genes in the major resistance locus of lettuce are subject to divergent selection

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

The major resistance gene cluster in lettuce is highly duplicated and spans several megabases

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

A computer program for aligning a cDNA sequence with a genomic DNA sequence

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

The paleontology of intergene retrotransposons of maize

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Dissection of the fusarium I2 gene cluster in tomato reveals six homologs and one active gene copy

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

PAML: a program package for phylogenetic analysis by maximum likelihood

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

EIN3-like gene expression during fruit ripening of Cavendish banana (Musa acuminata cv. Grande naine).

30 October 2018

1 reference

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30 October 2018

1 reference

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The R1 resistance gene cluster contains three groups of independently evolving, type I R1 homologues and shows substantial structural variation among haplotypes of Solanum demissum.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Large intraspecific haplotype variability at the Rph7 locus results from rapid and recent divergence in the barley genome

30 October 2018

1 reference

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SpliceMachine: predicting splice sites from high-dimensional local context representations

30 October 2018

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RDP2: recombination detection and analysis from sequence alignments.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Genome-wide identification of NBS genes in japonica rice reveals significant expansion of divergent non-TIR NBS-LRR genes

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Rapid genome divergence at orthologous low molecular weight glutenin loci of the A and Am genomes of wheat

30 October 2018

1 reference

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Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Nuclear DNA content and base composition in 28 taxa of Musa.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Pronounced intraspecific haplotype divergence at the RPP5 complex disease resistance locus of Arabidopsis

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

A Modified Bootscan Algorithm for Automated Identification of Recombinant Sequences and Recombination Breakpoints

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017797

Diploid Musa acuminata genetic diversity assayed with sequence-tagged microsatellite sites

30 October 2018

1 reference

12 December 2020

Grass genome organization and evolution

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12 December 2020

Identification of genetic markers linked to banana streak disease expression in inter-specific Musa hybrids

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12 December 2020

A new image of plantain diversity assessed by SSR, AFLP and MSAP markers

1 reference

12 December 2020

Recent duplications dominate NBS-encoding gene expansion in two woody species

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12 December 2020

The broad-spectrum potato cyst nematode resistance gene (Hero) from tomato is the only member of a large gene family of NBS-LRR genes with an unusual amino acid repeat in the LRR region

1 reference

12 December 2020

Creation of a BAC resource to study the structure and evolution of the banana (Musa balbisiana) genome

1 reference

12 December 2020

Possible emergence of new geminiviruses by frequent recombination

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12 December 2020

Population structure of wild bananas, Musa balbisiana, in China determined by SSR fingerprinting and cpDNA PCR-RFLP

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2229-10-149

1 reference

Dimensions Publication ID

28 July 2017

0 references

1 reference

28 July 2017

1 reference