(Q33648482)

28 July 2017

title

Replication initiation at a distance: determination of the cis- and trans-acting elements of replication origin alpha of plasmid R6K (English)

1 reference

28 July 2017

Mukesh Saxena

1

1 reference

28 July 2017

Mayuresh Abhyankar

series ordinal

2

1 reference

28 July 2017

Deepak Bastia

series ordinal

3

1 reference

28 July 2017

language of work or name

English

0 references

publication date

15 December 2009

1 reference

Journal of Biological Chemistry

28 July 2017

published in

1 reference

28 July 2017

volume

285

1 reference

28 July 2017

issue

8

1 reference

28 July 2017

page(s)

5705-5712

1 reference

The 3D structure of the immunoglobulin heavy-chain locus: implications for long-range genomic interactions.

28 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

An evaluation of 3C-based methods to capture DNA interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Long-range DNA contacts: romance in the nucleus?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Crystal structure of pi initiator protein-iteron complex of plasmid R6K: implications for initiation of plasmid DNA replication

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Biochemical investigations of control of replication initiation of plasmid R6K.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Reconstitution of R6K DNA replication in vitro using 22 purified proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Looping and interaction between hypersensitive sites in the active beta-globin locus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Mechanistic aspects of DnaA-RepA interaction as revealed by yeast forward and reverse two-hybrid analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Mechanism of termination of DNA replication of Escherichia coli involves helicase-contrahelicase interaction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Mechanism of recruitment of DnaB helicase to the replication origin of the plasmid pSC101.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Mechanistic studies of initiator-initiator interaction and replication initiation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Genes involved in conjugative DNA processing of plasmid R6K.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Plasmid R6K contains two functional oriTs which can assemble simultaneously in relaxosomes in vivo

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

In vivo assembly of the tau-complex of the DNA polymerase III holoenzyme expressed from a five-gene artificial operon. Cleavage of the tau-complex to form a mixed gamma-tau-complex by the OmpT protease.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Initiation of DNA replication by the Escherichia coli dnaG protein: evidence that tertiary structure is involved

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Overproduction of Escherichia coli integration host factor, a protein with nonidentical subunits

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Identification and characterization of the functional alpha origin of DNA replication of the R6K plasmid and its relatedness to the R6K beta and gamma origins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

The integration host factor of Escherichia coli binds to multiple sites at plasmid R6K gamma origin and is essential for replication

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

The localization of replication origins on ARS plasmids in S. cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Total reconstitution of DNA polymerase III holoenzyme reveals dual accessory protein clamps.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Alpha and beta replication origins of plasmid R6K show similar distortions of the DNA helix in vivo

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Roles of phi X174 type primosome- and G4 type primase-dependent primings in initiation of lagging and leading strand syntheses of DNA replication

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

AraC-DNA looping: Orientation and distance-dependent loop breaking by the cyclic AMP receptor protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Conformational changes induced by integration host factor at origin gamma of R6K and copy number control

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Structural and functional analysis of a replication enhancer: separation of the enhancer activity from origin function by mutational dissection of the replication origin gamma of plasmid R6K

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Activation of distant replication origins in vivo by DNA looping as revealed by a novel mutant form of an initiator protein defective in cooperativity at a distance

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Activation in vivo of the minimal replication origin beta of plasmid R6K requires a small target sequence essential for DNA looping

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Bidirectional replication of plasmid R6K DNA in Escherichia coli; correspondence between origin of replication and position of single-strand break in relaxed complex

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Mode of replication of the conjugative R-plasmid RSF1040 in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Construction of plasmid R6K derivatives in vitro: Characterization of the R6K replication region

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Molecular cloning of replication and incompatibility regions from the R-plasmid R6K

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

The RNA primer synthesized by primase to initiate phage G4 DNA replication

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Primase, the dnaG protein of Escherichia coli. An enzyme which starts DNA chains

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Roles of the G site and phi X174-type primosome assembly site in priming of leading-strand synthesis: initiation by a mobile primosome and replication-fork arrest by RepA protein bound to oriR.

21 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.067348

Three novel plasmid R6K proteins act in concert to distort DNA within the alpha and beta origins of DNA replication.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.067348

Expression, purification, crystallization, and NMR studies of the helicase interaction domain of Escherichia coli DnaG primase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.067348

Reconstitution of F factor DNA replication in vitro with purified proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.067348

Supercoiled loops and eucaryotic DNA replicaton

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.067348

Replication timing and epigenetic reprogramming of gene expression: a two-way relationship?

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.067348

Activity in vitro of three replication origins of the antibiotic resistance plasmid RSF1040

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2820798

Three origins of replication are active in vivo in the R plasmid RSF1040

30 October 2018

1 reference

12 December 2020

Interaction of the plasmid R6K-encoded replication initiator protein with its binding sites on DNA

1 reference

12 December 2020

Complexes of Escherichia coli primase with the replication origin of G4 phage DNA

1 reference

12 December 2020

Replication initiated at the origin (oriC) of the E. coli chromosome reconstituted with purified enzymes

1 reference

12 December 2020

Converting a eukaryotic transcriptional inhibitor into an activator

1 reference

12 December 2020

Replication of plasmid R6K origin gamma in vitro. Dependence on dual initiator proteins and inhibition by transcription

1 reference

12 December 2020

1 reference

12 December 2020

DnaA boxes in the P1 plasmid origin: the effect of their position on the directionality of replication and plasmid copy number

1 reference

12 December 2020

Identifiers

DOI

10.1074/JBC.M109.067348

1 reference

28 July 2017

1 reference

28 July 2017

1 reference