(Q33653601)

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Microarray meta-analysis database (M(2)DB): a uniformly pre-processed, quality controlled, and manually curated human clinical microarray database

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Microarray meta-analysis database (M(2)DB): a uniformly pre-processed, quality controlled, and manually curated human clinical microarray database (English)

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

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manually curated database

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author name string

Wei-Chung Cheng

1

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Min-Lung Tsai

2

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Cheng-Wei Chang

3

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Ching-Lung Huang

4

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Chaang-Ray Chen

5

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Wun-Yi Shu

6

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Yun-Shien Lee

7

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Tzu-Hao Wang

8

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Ji-Hong Hong

9

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Chia-Yang Li

10

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Ian C Hsu

11

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

publication date

10 August 2010

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Europe PubMed Central

PubMed publication ID

28 July 2017

BMC Bioinformatics

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

11

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

421

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

https://scigraph.springernature.com/pub.10.1186/1471-2105-11-421

0 references

ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928207

21 June 2018

WebArrayDB: cross-platform microarray data analysis and public data repository

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928207

21 June 2018

BioPortal: ontologies and integrated data resources at the click of a mouse

1 reference

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21 June 2018

A novel approach to detect differentially expressed genes from count-based digital databases by normalizing with housekeeping genes

1 reference

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21 June 2018

Microarray labeling extension values: laboratory signatures for Affymetrix GeneChips

1 reference

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21 June 2018

Comparison of Affymetrix data normalization methods using 6,926 experiments across five array generations

1 reference

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21 June 2018

CleanEx: new data extraction and merging tools based on MeSH term annotation

1 reference

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21 June 2018

Much room for improvement in deposition rates of expression microarray datasets

1 reference

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21 June 2018

Power enhancement via multivariate outlier testing with gene expression arrays

1 reference

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21 June 2018

Randomization in laboratory procedure is key to obtaining reproducible microarray results

1 reference

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21 June 2018

GEOmetadb: powerful alternative search engine for the Gene Expression Omnibus

1 reference

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21 June 2018

Statistical challenges in preprocessing in microarray experiments in cancer

1 reference

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21 June 2018

Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues

1 reference

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21 June 2018

GenMiner: mining non-redundant association rules from integrated gene expression data and annotations

1 reference

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21 June 2018

Key issues in conducting a meta-analysis of gene expression microarray datasets

1 reference

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21 June 2018

Meta-analysis approach identifies candidate genes and associated molecular networks for type-2 diabetes mellitus

1 reference

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21 June 2018

ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses

1 reference

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21 June 2018

The Ontology Lookup Service: more data and better tools for controlled vocabulary queries

1 reference

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21 June 2018

Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data

1 reference

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21 June 2018

EzArray: a web-based highly automated Affymetrix expression array data management and analysis system

1 reference

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21 June 2018

Using generalized procrustes analysis (GPA) for normalization of cDNA microarray data

1 reference

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21 June 2018

Survival prediction of stage I lung adenocarcinomas by expression of 10 genes

1 reference

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21 June 2018

MDQC: a new quality assessment method for microarrays based on quality control reports

1 reference

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21 June 2018

Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata

1 reference

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21 June 2018

Large-scale integration of cancer microarray data identifies a robust common cancer signature

1 reference

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21 June 2018

Meta-analysis of microarray results: challenges, opportunities, and recommendations for standardization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928207

21 June 2018

Celsius: a community resource for Affymetrix microarray data

1 reference

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21 June 2018

A gene expression signature predicts survival of patients with stage I non-small cell lung cancer

1 reference

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21 June 2018

Improvement in the reproducibility and accuracy of DNA microarray quantification by optimizing hybridization conditions

1 reference

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Meta-analysis and meta-review of thyroid cancer gene expression profiling studies identifies important diagnostic biomarkers.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928207

21 June 2018

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

1 reference

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21 June 2018

CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis

1 reference

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21 June 2018

Adjusting batch effects in microarray expression data using empirical Bayes methods

1 reference

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21 June 2018

Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes

1 reference

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21 June 2018

Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis

1 reference

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21 June 2018

Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential

1 reference

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1 reference

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21 June 2018

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1 reference

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1 reference

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Expression Profiler: next generation--an online platform for analysis of microarray data

1 reference

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Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression

1 reference

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1 reference

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21 June 2018

Comparison and meta-analysis of microarray data: from the bench to the computer desk.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928207

21 June 2018

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

1 reference

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21 June 2018

New normalization methods for cDNA microarray data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928207

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928207

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928207

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Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928207

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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12 December 2020

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Identifiers

10.1186/1471-2105-11-421

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

DBLP publication ID

journals/bmcbi/ChengTCHCSLWHLH10

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DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

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PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

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