(Q33659597)

28 July 2017

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo (English)

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28 July 2017

1

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28 July 2017

Barbara P Rattner

3

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author name string

Zarmik Moqtaderi

2

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28 July 2017

Ghia Euskirchen

4

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28 July 2017

Michael Snyder

5

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28 July 2017

James T Kadonaga

6

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28 July 2017

X Shirley Liu

7

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28 July 2017

Kevin Struhl

8

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28 July 2017

language of work or name

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20 July 2009

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Nature Structural & Molecular Biology

28 July 2017

1 reference

28 July 2017

16

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28 July 2017

8

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28 July 2017

847-852

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https://scigraph.springernature.com/pub.10.1038/nsmb.1636

28 July 2017

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cites work

The DNA-encoded nucleosome organization of a eukaryotic genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Nucleosome organization in the Drosophila genome.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Dynamic regulation of nucleosome positioning in the human genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

RNA polymerase is poised for activation across the genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

A high-resolution atlas of nucleosome occupancy in yeast

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

The Swi/Snf complex is important for histone eviction during transcriptional activation and RNA polymerase II elongation in vivo

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Transcriptional noise and the fidelity of initiation by RNA polymerase II.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

A genomic code for nucleosome positioning

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Antagonistic forces that position nucleosomes in vivo.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Genome-scale identification of nucleosome positions in S. cerevisiae

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Evidence for distinct mechanisms facilitating transcript elongation through chromatin in vivo

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Chromatin assembly in vitro with purified recombinant ACF and NAP-1.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Role of DNA sequence in nucleosome stability and dynamics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Histone acetylation at promoters is differentially affected by specific activators and repressors

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Yeast transcriptional regulatory mechanisms

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Sequence specific cleavage of DNA by micrococcal nuclease

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

DNA bending and its relation to nucleosome positioning.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Sequence periodicities in chicken nucleosome core DNA.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Statistical positioning of nucleosomes by specific protein-binding to an upstream activating sequence in yeast

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

14 July 2018

Structure of Chromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Evidence for nucleosome depletion at active regulatory regions genome-wide

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Nucleosomes unfold completely at a transcriptionally active promoter.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Dynamics of Replication-Independent Histone Turnover in Budding Yeast

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2823114

Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast

30 October 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNSMB.1636

New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

31 March 2020

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNSMB.1636

31 March 2020

Identifiers

DOI

10.1038/NSMB.1636

1 reference

Dimensions Publication ID

28 July 2017

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1 reference

28 July 2017

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