(Q33675443)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

title

Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

main subject

Staphylococcus aureus

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Xavier Didelot

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Elizabeth M Batty

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Bernadette C Young

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Tanya Golubchik

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

17

A Sarah Walker

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

18

Derrick W Crook

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

16

Tim E A Peto

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

7

Rory Bowden

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Antonina A Votintseva

9

object named as

Antonina Votintseva

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

5

Kyle Knox

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Hanna Larner-Svensson

10

object named as

Hanna Larner-Svensson

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

11

Jane Charlesworth

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

14

Heather Godwin

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

15

Rowena Fung

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

8

Adam Auton

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

author name string

Ruth R Miller

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Camilla L C Ip

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Daniel J Wilson

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

language of work or name

English

0 references

publication date

23 May 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

published in

Nature Communications

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

volume

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

page(s)

3956

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 3.0 Unported

19 March 2020

copyright license

start time

23 May 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1038/ncomms4956

0 references

cites work

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Prediction of Staphylococcus aureus antimicrobial resistance by whole-genome sequencing.

21 June 2018

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Healthcare-associated outbreak of meticillin-resistant Staphylococcus aureus bacteraemia: role of a cryptic variant of an epidemic clone

21 June 2018

1 reference

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Dynamics of acquisition and loss of carriage of Staphylococcus aureus strains in the community: the effect of clonal complex

21 June 2018

1 reference

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Evolution of methicillin-resistant Staphylococcus aureus towards increasing resistance

21 June 2018

1 reference

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Horizontal gene transfer converts non-toxigenic Clostridium difficile strains into toxin producers

21 June 2018

1 reference

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Within-host evolution of Staphylococcus aureus during asymptomatic carriage.

21 June 2018

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Subpopulations of Staphylococcus aureus clonal complex 121 are associated with distinct clinical entities

21 June 2018

1 reference

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A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic

21 June 2018

1 reference

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Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus

21 June 2018

1 reference

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Expression of a cryptic secondary sigma factor gene unveils natural competence for DNA transformation in Staphylococcus aureus.

21 June 2018

1 reference

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The accessory genome as a cradle for adaptive evolution in pathogens

21 June 2018

1 reference

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Transforming the untransformable: application of direct transformation to manipulate genetically Staphylococcus aureus and Staphylococcus epidermidis

21 June 2018

1 reference

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Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease

21 June 2018

1 reference

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Population genomics in bacteria: a case study of Staphylococcus aureus

21 June 2018

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21 June 2018

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Complete genome sequence of Staphylococcus aureus strain JKD6159, a unique Australian clone of ST93-IV community methicillin-resistant Staphylococcus aureus

21 June 2018

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genoPlotR: comparative gene and genome visualization in R

21 June 2018

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Evolutionary genomics of Staphylococcus aureus reveals insights into the origin and molecular basis of ruminant host adaptation

21 June 2018

1 reference

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Whole genome analysis of a livestock-associated methicillin-resistant Staphylococcus aureus ST398 isolate from a case of human endocarditis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

The population genetics of antibiotic resistance: integrating molecular mechanisms and treatment contexts.

21 June 2018

1 reference

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Evolution of MRSA during hospital transmission and intercontinental spread

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

Genome sequence of a recently emerged, highly transmissible, multi-antibiotic- and antiseptic-resistant variant of methicillin-resistant Staphylococcus aureus, sequence type 239 (TW).

21 June 2018

1 reference

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Recent human-to-poultry host jump, adaptation, and pandemic spread of Staphylococcus aureus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

Classification of staphylococcal cassette chromosome mec (SCCmec): guidelines for reporting novel SCCmec elements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

Integrative and sequence characteristics of a novel genetic element, ICE6013, in Staphylococcus aureus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

Reordering contigs of draft genomes using the Mauve aligner

21 June 2018

1 reference

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The Sequence Alignment/Map format and SAMtools

21 June 2018

1 reference

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Diversity of prophages in dominant Staphylococcus aureus clonal lineages.

21 June 2018

1 reference

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Atypical association of DDE transposition with conjugation specifies a new family of mobile elements.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths

21 June 2018

1 reference

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Shaping a bacterial genome by large chromosomal replacements, the evolutionary history of Streptococcus agalactiae.

21 June 2018

1 reference

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 June 2018

1 reference

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Molecular correlates of host specialization in Staphylococcus aureus

21 June 2018

1 reference

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Genome sequence of Staphylococcus aureus strain Newman and comparative analysis of staphylococcal genomes: polymorphism and evolution of two major pathogenicity islands

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

Staphylococcus aureus strains that are hypersusceptible to resistance gene transfer from enterococci

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

The antibiotic resistome: the nexus of chemical and genetic diversity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

Recombination and the nature of bacterial speciation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

Inference of bacterial microevolution using multilocus sequence data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

Complete genome sequence of USA300, an epidemic clone of community-acquired meticillin-resistant Staphylococcus aureus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

Population genetics of microbial pathogens estimated from multilocus sequence typing (MLST) data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

Understanding the rise of the superbug: investigation of the evolution and genomic variation of Staphylococcus aureus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

A bacteroides conjugative transposon, CTnERL, can transfer a portion of itself by conjugation without excising from the chromosome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

Evolutionary genetics of the accessory gene regulator (agr) locus in Staphylococcus aureus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

The role of nasal carriage in Staphylococcus aureus infections

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

Mechanisms of, and barriers to, horizontal gene transfer between bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant Staphylococcus aureus Strain and a Biofilm-Producing Methicillin-Resistant Staphylococcus epidermidis Strain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

Evolution of Staphylococcus aureus by large chromosomal replacements.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

How clonal is Staphylococcus aureus?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

A coalescent-based method for detecting and estimating recombination from gene sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

Whole genome sequencing of meticillin-resistant Staphylococcus aureus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

A fast algorithm for joint reconstruction of ancestral amino acid sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

Lateral gene transfer and the nature of bacterial innovation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

Mobilization of plasmids and chromosomal DNA mediated by the SXT element, a constin found in Vibrio cholerae O139

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staphylococcus aureus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

A genomic perspective on protein families

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

Conjugative transfer of Tn916 in Enterococcus faecalis: trans activation of homologous transposons

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036114

The fate of competing beneficial mutations in an asexual population.

21 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4956

A comparison of homologous recombination rates in bacteria and archaea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4956

The clonality of Staphylococcus aureus nasal carriage

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4956

II.—On the use of the term homology in modern zoology, and the distinction between homogenetic and homoplastic agreements

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4956

The influence of recombination on the population structure and evolution of the human pathogen Neisseria meningitidis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4956

The correlation between linkage disequilibrium and distance: implications for recombination in hominid mitochondria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4956

The phylogeny of Staphylococcus aureus - which genes make the best intra-species markers?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4956

Hyper-recombination, diversity, and antibiotic resistance in pneumococcus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4956

WebACT--an online companion for the Artemis Comparison Tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4956

Detecting recombination from gene trees

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24853639

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NCOMMS4956

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

19 March 2020

ADS bibcode

2014NatCo...5.3956E

0 references

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853639%20AND%20SRC:MED&resulttype=core&format=json