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Computational approaches to mapping allosteric pathways.
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4040315
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12 March 2020
title
Computational approaches to mapping allosteric pathways
(English)
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12 March 2020
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Jacob D Durrant
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12 March 2020
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Victoria A Feher
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12 March 2020
Adam T Van Wart
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12 March 2020
Rommie E Amaro
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12 March 2020
publication date
22 March 2014
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12 March 2020
published in
Current Opinion in Structural Biology
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12 March 2020
volume
25
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12 March 2020
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98-103
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12 March 2020
cites work
Weighted Implementation of Suboptimal Paths (WISP): An Optimized Algorithm and Tool for Dynamical Network Analysis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Global transitions of proteins explored by a multiscale hybrid methodology: application to adenylate kinase
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Microscopic insights into the NMR relaxation-based protein conformational entropy meter
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Emerging computational approaches for the study of protein allostery.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Automated identification of functional dynamic contact networks from X-ray crystallography
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
A distal mutation perturbs dynamic amino acid networks in dihydrofolate reductase
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Correlated motions and residual frustration in thrombin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Allo-network drugs: extension of the allosteric drug concept to protein- protein interaction and signaling networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
The dark energy of proteins comes to light: conformational entropy and its role in protein function revealed by NMR relaxation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Impact of mutations on the allosteric conformational equilibrium
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Exploring residue component contributions to dynamical network models of allostery
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
NetworkView: 3D display and analysis of protein·RNA interaction networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Conformational selection in trypsin-like proteases.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Protein frustratometer: a tool to localize energetic frustration in protein molecules.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Structure-based model of allostery predicts coupling between distant sites
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Understanding biomolecular motion, recognition, and allostery by use of conformational ensembles.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Change in allosteric network affects binding affinities of PDZ domains: analysis through perturbation response scanning
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Long-range intra-protein communication can be transmitted by correlated side-chain fluctuations alone
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Weak Long-Range Correlated Motions in a Surface Patch of Ubiquitin Involved in Molecular Recognition
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
On the role of frustration in the energy landscapes of allosteric proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Atomic-level characterization of the structural dynamics of proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Protein flexibility and ligand recognition: challenges for molecular modeling
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Allostery and population shift in drug discovery
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Global dynamics of proteins: bridging between structure and function
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Quantifying Correlations Between Allosteric Sites in Thermodynamic Ensembles
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Turning enzymes ON with small molecules
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Perturbation-response scanning reveals ligand entry-exit mechanisms of ferric binding protein
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Dynamical networks in tRNA:protein complexes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Allosteric modulators of GPCRs: a novel approach for the treatment of CNS disorders
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Localizing frustration in native proteins and protein assemblies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Contact rearrangements form coupled networks from local motions in allosteric proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Allosteric transitions in the chaperonin GroEL are captured by a dominant normal mode that is most robust to sequence variations.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Deciphering protein dynamics from NMR data using explicit structure sampling and selection
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Water mediation in protein folding and molecular recognition
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Community structure in social and biological networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Folding and binding cascades: dynamic landscapes and population shifts
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Evolutionarily conserved pathways of energetic connectivity in protein families
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Identification of side-chain clusters in protein structures by a graph spectral method.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Identification of communication networks in Spo0F: a model for phosphorylation-induced conformational change and implications for activation of multiple domain bacterial response regulators
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Essential dynamics of proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Dynamics of a small globular protein in terms of low-frequency vibrational modes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
21 June 2018
Global motions exhibited by proteins in micro- to milliseconds simulations concur with anisotropic network model predictions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
30 October 2018
Solvated dissipative electro-elastic network model of hydrated proteins.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
30 October 2018
Identification of functional motions in the adenylate kinase (ADK) protein family by computational hybrid approaches.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
30 October 2018
Allostery wiring diagrams in the transitions that drive the GroEL reaction cycle
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4040315
retrieved
30 October 2018
Allostery without conformational change. A plausible model
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24667124
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Millisecond-timescale motions contribute to the function of the bacterial response regulator protein Spo0F
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24667124
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Protein hydration in aqueous solution
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24667124
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Pump-probe molecular dynamics as a tool for studying protein motion and long range coupling
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24667124
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Large-amplitude nonlinear motions in proteins
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24667124
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Two-state allosteric behavior in a single-domain signaling protein
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24667124
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Full correlation analysis of conformational protein dynamics
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24667124
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/J.SBI.2014.02.004
1 reference
stated in
Europe PubMed Central
PMC publication ID
4040315
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24667124%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 March 2020
PMC publication ID
4040315
1 reference
stated in
Europe PubMed Central
PMC publication ID
4040315
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24667124%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 March 2020
PubMed publication ID
24667124
1 reference
stated in
Europe PubMed Central
PMC publication ID
4040315
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24667124%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 March 2020
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