(Q33696087)

28 July 2017

title

Probing the DNA-binding affinity and specificity of designed zinc finger proteins (English)

1 reference

28 July 2017

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Derek Jantz

1

1 reference

28 July 2017

Jeremy M Berg

series ordinal

2

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28 July 2017

language of work or name

English

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publication date

1 March 2010

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28 July 2017

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28 July 2017

volume

98

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28 July 2017

issue

5

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28 July 2017

page(s)

852-860

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Zinc-finger nucleases: a powerful tool for genetic engineering of animals

28 July 2017

cites work

1 reference

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Precise genome modification in the crop species Zea mays using zinc-finger nucleases

21 June 2018

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High-frequency modification of plant genes using engineered zinc-finger nucleases

21 June 2018

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Efficient gene targeting in Drosophila by direct embryo injection with zinc-finger nucleases.

21 June 2018

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An affinity-based scoring scheme for predicting DNA-binding activities of modularly assembled zinc-finger proteins.

21 June 2018

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Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modification

21 June 2018

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Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases

21 June 2018

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New redesigned zinc-finger proteins: design strategy and its application.

21 June 2018

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Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool.

21 June 2018

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Reduction in DNA-binding affinity of Cys2His2 zinc finger proteins by linker phosphorylation.

21 June 2018

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The design of functional DNA-binding proteins based on zinc finger domains.

21 June 2018

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Structure of a designed dimeric zinc finger protein bound to DNA

21 June 2018

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Chimeric nucleases stimulate gene targeting in human cells

21 June 2018

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Affinity and sequence specificity of DNA binding and site selection for primer synthesis by Escherichia coli primase

21 June 2018

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Induction of angiogenesis in a mouse model using engineered transcription factors

21 June 2018

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21 June 2018

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Regulation of transgene expression in plants with polydactyl zinc finger transcription factors

30 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Equilibrium binding assays reveal the elevated stoichiometry and salt dependence of the interaction between full-length human sex-determining region on the Y chromosome (SRY) and DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Distamycin A affects the stability of NF-kappaB p50-DNA complexes in a sequence-dependent manner

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Engineering polydactyl zinc-finger transcription factors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Design and selection of novel Cys2His2 zinc finger proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Regulation of an endogenous locus using a panel of designed zinc finger proteins targeted to accessible chromatin regions. Activation of vascular endothelial growth factor A.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Stimulation of homologous recombination through targeted cleavage by chimeric nucleases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

DNA recognition by Cys2His2 zinc finger proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Combining structure-based design with phage display to create new Cys(2)His(2) zinc finger dimers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Quantitative characterization of the interaction between purified human estrogen receptor alpha and DNA using fluorescence anisotropy.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Zinc finger peptides for the regulation of gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Toward controlling gene expression at will: selection and design of zinc finger domains recognizing each of the 5'-GNN-3' DNA target sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

The salt dependence of DNA recognition by NF-kappaB p50: a detailed kinetic analysis of the effects on affinityand specificity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Toward controlling gene expression at will: specific regulation of the erbB-2/HER-2 promoter by using polydactyl zinc finger proteins constructed from modular building blocks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Equilibrium binding of estrogen receptor with DNA using fluorescence anisotropy.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Fluorescence anisotropy: rapid, quantitative assay for protein-DNA and protein-protein interaction.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

A 2.2 A resolution crystal structure of a designed zinc finger protein bound to DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Use of a zinc-finger consensus sequence framework and specificity rules to design specific DNA binding proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Fluorescence anisotropy assays implicate protein-protein interactions in regulating trp repressor DNA binding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Zinc finger phage: affinity selection of fingers with new DNA-binding specificities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Length-encoded multiplex binding site determination: application to zinc finger proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Use of difference boundary sedimentation velocity to investigate nonspecific protein-nucleic acid interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Proposed structure for the zinc-binding domains from transcription factor IIIA and related proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Three-dimensional solution structure of a single zinc finger DNA-binding domain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Application of fluorescence energy transfer and polarization to monitor Escherichia coli cAMP receptor protein and lac promoter interaction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

16 Analysis of equilibrium and kinetic measurements to determine thermodynamic origins of stability and specificity and mechanism of formation of site-specific complexes between proteins and helical DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Toward rules relating zinc finger protein sequences and DNA binding site preferences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Interpretation of monovalent and divalent cation effects on the lac repressor-operator interaction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Gene targeting in Drosophila and Caenorhabditis elegans with zinc-finger nucleases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Design, construction and in vitro testing of zinc finger nucleases.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Structure of Aart, a designed six-finger zinc finger peptide, bound to DNA.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Analysis of zinc fingers optimized via phage display: evaluating the utility of a recognition code

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Thermodynamics of the interactions of lac repressor with variants of the symmetric lac operator: effects of converting a consensus site to a non-specific site.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

Phage display methods for selecting zinc finger proteins with novel DNA-binding specificities

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

An exact mathematical expression for describing competitive binding of two different ligands to a protein molecule.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2830443

10.1016/J.BPJ.2009.11.021

30 October 2018

Identifiers

DOI

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28 July 2017

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28 July 2017

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