(Q44249816)

English

16 Analysis of equilibrium and kinetic measurements to determine thermodynamic origins of stability and specificity and mechanism of formation of site-specific complexes between proteins and helical DNA

scientific article published on January 1, 1991

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scholarly article

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Europe PubMed Central

PubMed publication ID

1 December 2017

16 Analysis of equilibrium and kinetic measurements to determine thermodynamic origins of stability and specificity and mechanism of formation of site-specific complexes between proteins and helical DNA (English)

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10.1016/0076-6879(91)08018-D

https://api.crossref.org/works/10.1016/0076-6879(91)08018-D

21 November 2022

Analysis of equilibrium and kinetic measurements to determine thermodynamic origins of stability and specificity and mechanism of formation of site-specific complexes between proteins and helical DNA (English)

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1779839

21 November 2022

nucleic acid sequence analysis

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based on heuristic

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author name string

Record MT Jr

1

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Europe PubMed Central

PubMed publication ID

1 December 2017

M. T. Record

1

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Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1779839

21 November 2022

J. H. Ha

2

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Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1779839

21 November 2022

M. A. Fisher

3

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Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1779839

21 November 2022

language of work or name

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publication date

1 January 1991

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1 December 2017

Methods in Enzymology

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1 December 2017

208

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Europe PubMed Central

PubMed publication ID

1 December 2017

291-343

1 reference

Europe PubMed Central

PubMed publication ID

1 December 2017

DNA recognition by proteins with the helix-turn-helix motif

1

1 reference

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21 November 2022

A protein structure from nuclear magnetic resonance data. lac repressor headpiece

2

1 reference

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21 November 2022

Complex of lac repressor headpiece with a 14 base-pair lac operator fragment studied by two-dimensional nuclear magnetic resonance

3

1 reference

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21 November 2022

H NMR study of a complex between the lac repressor headpiece and a 22 base pair symmetric lac operator

5

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21 November 2022

Sigma factors from E. coli, B. subtilis, phage SP01, and phage T4 are homologous proteins

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21 November 2022

How do enzymes work?

11

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21 November 2022

Recognition of a DNA operator by the repressor of phage 434: a view at high resolution

12

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21 November 2022

Thermodynamic origins of specificity in the lac repressor-operator interaction. Adaptability in the recognition of mutant operator sites

13

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21 November 2022

Role of the hydrophobic effect in stability of site-specific protein-DNA complexes

14

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21 November 2022

Ion effects on the lac repressor-operator equilibrium

15

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21 November 2022

Diffusion-driven mechanisms of protein translocation on nucleic acids. 2. The Escherichia coli lac repressor-operator interaction: equilibrium measurements

16

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21 November 2022

Thermodynamic analysis of the lactose repressor-operator DNA interaction

17

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21 November 2022

Lac repressor-operator interaction. I. Equilibrium studies

18

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21 November 2022

Interaction of the Escherichia coli Gal repressor protein with its DNA operators in vitro.

20

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21 November 2022

Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis

21

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21 November 2022

A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system

22

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21 November 2022

Consensus DNA site for the Escherichia coli catabolite gene activator protein (CAP): CAP exhibits a 450-fold higher affinity for the consensus DNA site than for the E. coli lac DNA site

23

1 reference

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21 November 2022

Binding of Escherichia coli ribonucleic acid polymerase holoenzyme to a bacteriophage T7 promoter-containing fragment: evaluation of promoter binding constants as a function of solution conditions

26

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21 November 2022

Intermediates in the formation of the open complex by RNA polymerase holoenzyme containing the sigma factor sigma 32 at the groE promoter.

29

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21 November 2022

The energetic basis of specificity in the Eco RI endonuclease--DNA interaction.

30

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21 November 2022

Bacteriophage P22 Mnt repressor. DNA binding and effects on transcription in vitro.

32

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21 November 2022

Interaction of the bacteriophage P22 Arc repressor with operator DNA.

33

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21 November 2022

Lambda repressor mutations that increase the affinity and specificity of operator binding.

34

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21 November 2022

Energetics of cooperative protein-DNA interactions: comparison between quantitative deoxyribonuclease footprint titration and filter binding

36

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21 November 2022

Kinetic studies on Cro repressor-operator DNA interaction

37

1 reference

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21 November 2022

On the determination of deoxyribonucleic acid-protein interaction parameters using the nitrocellulose filter-binding assay.

39

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21 November 2022

DNA-binding site of lac repressor probed by dimethylsulfate methylation of lac operator

40

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21 November 2022

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

42

1 reference

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21 November 2022

Binding of Escherichia coli RNA polymerase holoenzyme to bacteriophage T7 DNA. Measurements of binding at bacteriophage T7 promoter A1 using a template competition assay

43

1 reference

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21 November 2022

Kinetics and mechanism of the interaction of Escherichia coli RNA polymerase with the λPR promoter

44

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21 November 2022

Temperature dependence of the rate constants of the Escherichia coli RNA polymerase-lambda PR promoter interaction. Assignment of the kinetic steps corresponding to protein conformational change and DNA opening

45

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21 November 2022

Regulation of the kinetics of the interaction of Escherichia coli RNA polymerase with the lambda PR promoter by salt concentration

46

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21 November 2022

Dynamic and structural characterisation of multiple steps during complex formation between E. coli RNA polymerase and the tetR promoter from pSC101.

48

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21 November 2022

Contribution to the thermodynamics of protein folding from the reduction in water-accessible nonpolar surface area.

52

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21 November 2022

Principles of protein-protein recognition

56

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21 November 2022

LINKED FUNCTIONS AND RECIPROCAL EFFECTS IN HEMOGLOBIN: A SECOND LOOK.

57

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21 November 2022

Extension of the theory of linked functions to incorporate the effects of protein hydration

58

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21 November 2022

Nonspecific interaction of lac repressor with DNA: an association reaction driven by counterion release.

59

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21 November 2022

Pentalysine-deoxyribonucleic acid interactions: a model for the general effects of ion concentrations on the interactions of proteins with nucleic acids.

60

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21 November 2022

Interpretation of monovalent and divalent cation effects on the lac repressor-operator interaction

61

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21 November 2022

Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: the roles of ion association or release, screening, and ion effects on water activity

62

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21 November 2022

Limiting Laws and Counterion Condensation in Polyelectrolyte Solutions I. Colligative Properties

63

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21 November 2022

Ion effects on ligand-nucleic acid interactions

66

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21 November 2022

The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides

67

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21 November 2022

Nucleic acid binding properties of Escherichia coli ribosomal protein S1. I. Structure and interactions of binding site I.

69

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21 November 2022

Negative co-operativity in Escherichia coli single strand binding protein-oligonucleotide interactions. II. Salt, temperature and oligonucleotide length effects

70

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21 November 2022

Ion distributions around DNA and other cylindrical polyions: theoretical descriptions and physical implications

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21 November 2022

Equilibrium dialysis studies of polyamine binding to DNA

74

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21 November 2022

Competitive interactions of Co(NH3)6(3+) and Na+ with helical B-DNA probed by 59Co and 23Na NMR

75

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21 November 2022

Structural and electrostatic effects on binding of trivalent cations to double-stranded and single-stranded poly[d (AT)]

76

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21 November 2022

Monte Carlo description of oligoelectrolyte properties of DNA oligomers: range of the end effect and the approach of molecular and thermodynamic properties to the polyelectrolyte limits

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21 November 2022

Preferential interactions of proteins with salts in concentrated solutions.

79

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21 November 2022

Replacement of potassium chloride by potassium glutamate dramatically enhances protein-DNA interactions in vitro

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21 November 2022

Equilibrium binding of Escherichia coli single-strand binding protein to single-stranded nucleic acids in the (SSB)65 binding mode. Cation and anion effects and polynucleotide specificity.

82

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21 November 2022

The Hofmeister effect and the behaviour of water at interfaces

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21 November 2022

Use of difference boundary sedimentation velocity to investigate nonspecific protein-nucleic acid interactions

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21 November 2022

Double helical DNA: conformations, physical properties, and interactions with ligands

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21 November 2022

Crystal structure of an engrailed homeodomain-DNA complex at 2.8 A resolution: a framework for understanding homeodomain-DNA interactions

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21 November 2022

Thermodynamic extent of counterion release upon binding oligolysines to single-stranded nucleic acids

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21 November 2022

Journal of Molecular Biology

92

author name string

Cayley

publication date

1991

1 reference

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21 November 2022

Characterization of ribonucleic acid polymerase-T7 promoter binary complexes

93

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21 November 2022

Analysis of ion concentration effects of the kinetics of protein-nucleic acid interactions. Application to lac repressor-operator interactions

94

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21 November 2022

Physical studies of protein-DNA complexes by footprinting

96

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21 November 2022

Changes in the DNA structure of the lac UV5 promoter during formation of an open complex with Escherichia coli RNA polymerase

98

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21 November 2022

The lac repressor-operator interaction. 3. Kinetic studies

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21 November 2022

Studies of the binding of Escherichia coli RNA polymerase to DNA. II. The kinetics of the binding reaction

100

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21 November 2022

Diffusion-controlled macromolecular interactions

102

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21 November 2022

Mechanism of protein stabilization by glycerol: preferential hydration in glycerol-water mixtures

105

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21 November 2022

Rate-limiting steps in RNA chain initiation

107

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21 November 2022

Mechanism and control of transcription initiation in prokaryotes

108

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21 November 2022

Binding of Escherichia coli RNA polymerase holoenzyme to bacteriophage T7 DNA. Measurements of the rate of open complex formation at T7 promoter A.

109

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21 November 2022

Kinetics of open complex formation between Escherichia coli RNA polymerase and the lac UV5 promoter. Evidence for a sequential mechanism involving three steps

110

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21 November 2022

Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.

111

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21 November 2022

Salt dependence of the kinetics of the lac repressor-operator interaction: role of nonoperator deoxyribonucleic acid in the association reaction

112

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21 November 2022

Diffusion controlled reaction rates in spheroidal geometry. Application to repressor--operator association and membrane bound enzymes

113

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21 November 2022

Dissection of the structure and activity of the tyrosyl-tRNA synthetase by site-directed mutagenesis

119

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21 November 2022

Additivity of mutational effects in proteins

120

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21 November 2022

Identifiers

10.1016/0076-6879(91)08018-D

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Europe PubMed Central

PubMed publication ID

1 December 2017

release_bntxh4yyzffhrnyltgcmy6ngtm

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https://api.fatcat.wiki/v0/release/bntxh4yyzffhrnyltgcmy6ngtm

24 November 2022

based on heuristic

mapped directly with Wikidata item

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

1 December 2017

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