(Q33699465)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20860850%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

title

Detecting variants with Metabolic Design, a new software tool to design probes for explorative functional DNA microarray development (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20860850%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20860850%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Olivier Gonçalves

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20860850%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Eric Dugat-Bony

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20860850%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Delphine Boucher

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20860850%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Pierre Peyret

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20860850%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

2

Eric Peyretaillade

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20860850%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Corinne Biderre-Petit

7

object named as

Corinne Biderre-Petit

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20860850%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

9

Julien Troquet

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20860850%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

author name string

Fabrice Gravelat

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20860850%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Anne Moné

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20860850%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

publication date

23 September 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20860850%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20860850%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

volume

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20860850%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

page(s)

478

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20860850%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

14 February 2020

SQL

1 reference

26 June 2022

https://europepmc.org/article/PMC/PMC2955052

inferred from PubMed Central ID database lookup

cites work

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Optimization of the BLASTN substitution matrix for prediction of non-specific DNA microarray hybridization

28 July 2018

1 reference

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The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

28 July 2018

1 reference

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Microarray-based multicycle-enrichment of genomic subsets for targeted next-generation sequencing

28 July 2018

1 reference

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28 July 2018

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28 July 2018

1 reference

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Empirical evaluation of a new method for calculating signal-to-noise ratio for microarray data analysis

28 July 2018

1 reference

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Functional metagenomic profiling of nine biomes

28 July 2018

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28 July 2018

1 reference

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KEGGanim: pathway animations for high-throughput data

28 July 2018

1 reference

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GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes.

28 July 2018

1 reference

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Toward a universal microarray: prediction of gene expression through nearest-neighbor probe sequence identification

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Applying negative rule mining to improve genome annotation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Identification, cloning, and characterization of a multicomponent biphenyl dioxygenase from Sphingobium yanoikuyae B1.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Oligonucleotide microarrays: widely applied--poorly understood.

28 July 2018

1 reference

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Greene SCPrimer: a rapid comprehensive tool for designing degenerate primers from multiple sequence alignments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Microarray-based analysis of microbial community RNAs by whole-community RNA amplification.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

NMPP: a user-customized NimbleGen microarray data processing pipeline

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Toward a census of bacteria in soil

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Identification and functional analysis of the genes for naphthalenesulfonate catabolism by Sphingomonas xenophaga BN6.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Improving the specificity of high-throughput ortholog prediction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

E-Predict: a computational strategy for species identification based on observed DNA microarray hybridization patterns

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Catabolic role of a three-component salicylate oxygenase from Sphingomonas yanoikuyae B1 in polycyclic aromatic hydrocarbon degradation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Identification and functional analysis of two aromatic-ring-hydroxylating dioxygenases from a sphingomonas strain that degrades various polycyclic aromatic hydrocarbons.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

'Conserved hypothetical' proteins: prioritization of targets for experimental study

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

BRENDA, the enzyme database: updates and major new developments

28 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

28 July 2018

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

The unique aromatic catabolic genes in sphingomonads degrading polycyclic aromatic hydrocarbons (PAHs).

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Microarray-based detection and genotyping of viral pathogens

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Microbial diversity and function in soil: from genes to ecosystems

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Identification of four structural genes and two putative promoters necessary for utilization of naphthalene, phenanthrene, fluoranthene by Sphingomonas paucimobilis var. EPA505.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Identification of novel metabolites in the degradation of phenanthrene by Sphingomonas sp. strain P2.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

The ProDom database of protein domain families

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

The Staden sequence analysis package

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

DNA recovery from soils of diverse composition.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Isolation and characterization of a fluoranthene-utilizing strain of Pseudomonas paucimobilis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Basic local alignment search tool

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

A comparison of algorithms for a complete backtranslation of oligopeptides

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Microarray-based analysis of microbial functional diversity along an oil contamination gradient in oil field

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

An evaluation of custom microarray applications: the oligonucleotide design challenge.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Microarray-based functional gene analysis of soil microbial communities during ozonation and biodegradation of crude oil.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

EcoCyc: a comprehensive view of Escherichia coli biology

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

YODA: selecting signature oligonucleotides

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

GoArrays: highly dynamic and efficient microarray probe design.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Selection of oligonucleotide probes for protein coding sequences

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Identification of three novel salicylate 1-hydroxylases involved in the phenanthrene degradation of Sphingobium sp. strain P2.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Exploring microbial diversity for biotechnology: the way forward

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955052

Database resources of the National Center for Biotechnology Information

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20860850

12 December 2020

inferred from PubMed ID database lookup

The crystal structure of the ring-hydroxylating dioxygenase from Sphingomonas CHY-1

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20860850

12 December 2020

inferred from PubMed ID database lookup

Targeted next-generation sequencing by specific capture of multiple genomic loci using low-volume microfluidic DNA arrays

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20860850

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/1471-2105-11-478

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20860850%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/TerratPGDGMBBTP10

14 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20860850%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

PubMed publication ID

20860850

1 reference