(Q33703882)

28 July 2017

title

Structural and kinetic determinants of protease substrates (English)

1 reference

28 July 2017

John C Timmer

1

1 reference

28 July 2017

Wenhong Zhu

2

1 reference

28 July 2017

Cristina Pop

3

1 reference

28 July 2017

Tim Regan

4

1 reference

28 July 2017

Scott J Snipas

5

1 reference

28 July 2017

Alexey M Eroshkin

6

1 reference

28 July 2017

Stefan J Riedl

7

1 reference

28 July 2017

Guy S Salvesen

8

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28 July 2017

publication date

20 September 2009

1 reference

Nature Structural & Molecular Biology

28 July 2017

published in

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28 July 2017

volume

16

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28 July 2017

issue

10

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28 July 2017

page(s)

1101-1108

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Global mapping of the topography and magnitude of proteolytic events in apoptosis

28 July 2017

cites work

1 reference

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Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini

21 June 2018

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Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites

21 June 2018

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Mechanistic insight into taxol-induced cell death

21 June 2018

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Protein abundance profiling of the Escherichia coli cytosol

21 June 2018

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Apoptotic caspase activation and activity

21 June 2018

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Applications of diagonal chromatography for proteome-wide characterization of protein modifications and activity-based analyses.

21 June 2018

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Profiling constitutive proteolytic events in vivo

21 June 2018

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Identification of proteolytic cleavage sites by quantitative proteomics

21 June 2018

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21 June 2018

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21 June 2018

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Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research

21 June 2018

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Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments

21 June 2018

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Positional proteomics: selective recovery and analysis of N-terminal proteolytic peptides

21 June 2018

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Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations

21 June 2018

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The role of scaffolding in standard mechanism serine proteinase inhibitors

21 June 2018

1 reference

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WebLogo: A Sequence Logo Generator

21 June 2018

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Caspase activation - stepping on the gas or releasing the brakes? Lessons from humans and flies

21 June 2018

1 reference

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Human and mouse proteases: a comparative genomic approach

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4042863

Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4042863

Many cuts to ruin: a comprehensive update of caspase substrates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4042863

Serpin structure, mechanism, and function

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4042863

Molecular determinants of metalloproteinase substrate specificity: matrix metalloproteinase substrate binding domains, modules, and exosites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4042863

Determination of protease cleavage site motifs using mixture-based oriented peptide libraries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4042863

Global analysis of proteasomal substrate specificity using positional-scanning libraries of covalent inhibitors.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4042863

Internally quenched fluorescent peptide substrates disclose the subsite preferences of human caspases 1, 3, 6, 7 and 8

21 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4042863

21 June 2018

Substrate specificity of human collagenase 3 assessed using a phage-displayed peptide library

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4042863

Rapid and general profiling of protease specificity by using combinatorial fluorogenic substrate libraries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4042863

Protein secondary structure prediction based on position-specific scoring matrices

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4042863

Pro-caspase-3 is a major physiologic target of caspase-8.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4042863

A combinatorial approach defines specificities of members of the caspase family and granzyme B. Functional relationships established for key mediators of apoptosis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4042863

Apopain/CPP32 cleaves proteins that are essential for cellular repair: a fundamental principle of apoptotic death

21 June 2018

1 reference

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Rapid identification of highly active and selective substrates for stromelysin and matrilysin using bacteriophage peptide display libraries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4042863

The clot thickens: clues provided by thrombin structure.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4042863

Origins of the specificity of tissue-type plasminogen activator

21 June 2018

1 reference

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Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 June 2018

1 reference

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Molecular recognition. Conformational analysis of limited proteolytic sites and serine proteinase protein inhibitors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4042863

Directing sequence-specific proteolysis to new targets. The influence of loop size and target sequence on selective proteolysis by tissue-type plasminogen activator and urokinase-type plasminogen activator.

21 June 2018

1 reference

Crossref

Proteomics discovery of metalloproteinase substrates in the cellular context by iTRAQ labeling reveals a diverse MMP-2 substrate degradome.

21 January 2018

1 reference

Crossref

Mining genomes: correlating tandem mass spectra of modified and unmodified peptides to sequences in nucleotide databases

21 January 2018

1 reference

Crossref

31 March 2020

Identifiers

DOI

10.1038/NSMB.1668

1 reference

28 July 2017

1 reference

28 July 2017

1 reference