(Q33707373)

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Differentially expressed RNA from public microarray data identifies serum protein biomarkers for cross-organ transplant rejection and other conditions

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scholarly article

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Europe PubMed Central

PubMed publication ID

28 July 2017

Differentially expressed RNA from public microarray data identifies serum protein biomarkers for cross-organ transplant rejection and other conditions (English)

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

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14

object named as

Atul J Butte

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

author name string

Rong Chen

1

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Tara K Sigdel

2

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Li Li

3

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Neeraja Kambham

4

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Joel T Dudley

5

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Szu-Chuan Hsieh

6

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

R Bryan Klassen

7

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Amery Chen

8

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Tuyen Caohuu

9

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Alexander A Morgan

10

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Hannah A Valantine

11

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Kiran K Khush

12

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Minnie M Sarwal

13

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

publication date

23 September 2010

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Europe PubMed Central

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28 July 2017

PLOS Computational Biology

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Europe PubMed Central

PubMed publication ID

28 July 2017

6

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

9

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

copyright license

Creative Commons Attribution 4.0 International

23 September 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Gene-expression profiling for rejection surveillance after cardiac transplantation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

HLA class I (ABC) upregulation on peripheral blood CD3+/CD8+ T lymphocyte surface is a potential predictor of acute rejection in renal transplantation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

Decreasing plasma soluble IL-1 receptor antagonist and increasing monocyte activation early post-transplant may be involved in pathogenesis of delayed graft function in renal transplant recipients

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

Disease signatures are robust across tissues and experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

Database systems for knowledge-based discovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

Acute rejection episodes after kidney transplantation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

Identification of discriminating biomarkers for human disease using integrative network biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

GeneChaser: identifying all biological and clinical conditions in which genes of interest are differentially expressed

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

Microarrays: monitoring for transplant tolerance and mechanistic insights

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

The proteogenomic path towards biomarker discovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

Enabling integrative genomic analysis of high-impact human diseases through text mining

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

AILUN: reannotating gene expression data automatically

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

Evaluation and integration of 49 genome-wide experiments and the prediction of previously unknown obesity-related genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

A mixture model approach to the tests of concordance and discordance between two large-scale experiments with two-sample groups

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

ArrayExpress--a public database of microarray experiments and gene expression profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

NCBI GEO: mining tens of millions of expression profiles--database and tools update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

Advances and challenges in liquid chromatography-mass spectrometry-based proteomics profiling for clinical applications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

Creation and implications of a phenome-genome network

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

Identification and proteomic profiling of exosomes in human urine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

Kidney transplant rejection and tissue injury by gene profiling of biopsies and peripheral blood lymphocytes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

A gene atlas of the mouse and human protein-encoding transcriptomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

ONCOMINE: a cancer microarray database and integrated data-mining platform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

Noninvasive diagnosis of acute rejection of solid organ transplants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

The human plasma proteome: a nonredundant list developed by combination of four separate sources

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

The Unified Medical Language System (UMLS): integrating biomedical terminology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000940

21 January 2018

Promising early outcomes with a novel, complete steroid avoidance immunosuppression protocol in pediatric renal transplantation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

Significance analysis of microarrays applied to the ionizing radiation response

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

Increased expression of inflammatory cytokines and adhesion molecules by alveolar macrophages of human lung allograft recipients with acute rejection: decline with resolution of rejection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

Using oligonucleotide probe arrays to access genetic diversity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

21 June 2018

Molecular heterogeneity in acute renal allograft rejection identified by DNA microarray profiling.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000940

21 January 2018

Comparing microarray versus RT-PCR assessment of renal allograft biopsies: similar performance despite different dynamic ranges.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000940

21 January 2018

Microarray analysis of rejection in human kidney transplants using pathogenesis-based transcript sets.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000940

21 January 2018

Prediction of acute renal allograft rejection by urinary monokine induced by IFN-gamma (MIG).

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000940

21 January 2018

A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000940

21 January 2018

Continued superior outcomes with modification and lengthened follow-up of a steroid-avoidance pilot with extended daclizumab induction in pediatric renal transplantation

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000940

21 January 2018

Evaluation of serum tumor necrosis factor alpha and its correlation with histology in chronic kidney disease, stable renal transplant and rejection cases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

30 October 2018

Prediction of subclinical renal allograft rejection by vascular endothelial growth factor in serum and urine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

30 October 2018

Molecular profiling improves diagnoses of rejection and infection in transplanted organs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944782

10 December 2018

Renal expression of CD44 correlates with acute renal allograft rejection

1 reference

https://pubmed.ncbi.nlm.nih.gov/20885780

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Banff '05 Meeting Report: differential diagnosis of chronic allograft injury and elimination of chronic allograft nephropathy ('CAN')

1 reference

https://pubmed.ncbi.nlm.nih.gov/20885780

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Role of PECAM-1 in acute rejection of fully major histocompatibility complex class II-mismatched cardiac allografts in mice

1 reference

https://pubmed.ncbi.nlm.nih.gov/20885780

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Acute renal allograft rejection is associated with increased levels of vascular endothelial growth factor in the urine

1 reference

https://pubmed.ncbi.nlm.nih.gov/20885780

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multicenter validation of a 1,550-gene expression profile for identification of tumor tissue of origin

1 reference

https://pubmed.ncbi.nlm.nih.gov/20885780

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of acute renal allograft rejection by human serum proteomic analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/20885780

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Serum vascular endothelial growth factor as a surveillance marker for cellular rejection in pediatric cardiac transplantation

1 reference

https://pubmed.ncbi.nlm.nih.gov/20885780

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PCBI.1000940

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

DBLP publication ID

journals/ploscb/ChenSLKDHKCCMVKSB10

1 reference

DBLP Dataset 2021-01-02

28 January 2021

release_7rhemnv2xnaefijtsznopfbrai

1 reference

https://api.fatcat.wiki/v0/release/7rhemnv2xnaefijtsznopfbrai

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

ResearchGate publication ID

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