(Q33708402)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20888480%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

title

Automation in single-particle electron microscopy connecting the pieces (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20888480%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

0 references

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20888480%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Arne Möller

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20888480%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Bridget Carragher

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20888480%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

author name string

Dmitry Lyumkis

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20888480%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Anchi Cheng

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20888480%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Amber Herold

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20888480%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Eric Hou

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20888480%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Christopher Irving

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20888480%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Erica L Jacovetty

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20888480%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Pick-Wei Lau

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20888480%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Anke M Mulder

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20888480%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

James Pulokas

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20888480%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Joel D Quispe

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20888480%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Clinton S Potter

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20888480%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

language of work or name

English

0 references

publication date

1 January 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20888480%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

published in

Methods in Enzymology

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20888480%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

volume

483

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20888480%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

page(s)

291-338

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20888480%20AND%20SRC:MED&resulttype=core&format=json

Determining the architectures of macromolecular assemblies

14 February 2020

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7 January 2021

Molecular interactions in rotavirus assembly and uncoating seen by high-resolution cryo-EM

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7 January 2021

Structure of the human transferrin receptor-transferrin complex

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7 January 2021

Single particle reconstructions of the transferrin-transferrin receptor complex obtained with different specimen preparation techniques

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7 January 2021

Towards automated screening of two-dimensional crystals

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7 January 2021

4.0-A resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement

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7 January 2021

Three dimensional reconstructions of spherical viruses by fourier synthesis from electron micrographs

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7 January 2021

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7 January 2021

Transmission electron microscopy with Zernike phase plate

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7 January 2021

A Simple Method for obtaining Perforated Supporting Membranes for Electron Microscopy

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7 January 2021

Electron microscopy of frozen water and aqueous solutions

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7 January 2021

Cryo-electron microscopy of vitrified specimens

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7 January 2021

Electronic detectors for electron microscopy

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7 January 2021

A relational database for cryoEM: experience at one year and 50 000 images

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7 January 2021

CTF determination and correction in electron cryotomography.

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7 January 2021

Sharpening high resolution information in single particle electron cryomicroscopy

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7 January 2021

Single-particle reconstruction of biological macromolecules in electron microscopy--30 years

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7 January 2021

Correspondence analysis of aligned images of biological particles.

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7 January 2021

Computer Averaging of Electron Micrographs of 40 S Ribosomal Subunits

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7 January 2021

SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields

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7 January 2021

Cryoelectron microscopy of liposomes

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7 January 2021

Clustering by passing messages between data points

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7 January 2021

Toward fully automated high-resolution electron tomography

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7 January 2021

The structure of the C-terminal actin-binding domain of talin

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7 January 2021

FREALIGN: high-resolution refinement of single particle structures

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7 January 2021

A two step approach for semi-automated particle selection from low contrast cryo-electron micrographs

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7 January 2021

Holey Films for Electron Microscopy

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7 January 2021

Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy

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7 January 2021

Bsoft: image and molecular processing in electron microscopy.

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7 January 2021

Bsoft: image processing and molecular modeling for electron microscopy

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7 January 2021

Computational resources for cryo-electron tomography in Bsoft.

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7 January 2021

SPARX, a new environment for Cryo-EM image processing

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7 January 2021

Automated electron microscopy for evaluating two-dimensional crystallization of membrane proteins

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7 January 2021

Application of template matching technique to particle detection in electron micrographs

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7 January 2021

Automated determination of parameters describing power spectra of micrograph images in electron microscopy

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7 January 2021

The 2DX robot: A membrane protein 2D crystallization Swiss Army knife

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7 January 2021

Backbone structure of the infectious epsilon15 virus capsid revealed by electron cryomicroscopy

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7 January 2021

Efficiency of 2D alignment methods

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7 January 2021

High-Resolution Structural Analysis of a DNA Nanostructure by cryoEM

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7 January 2021

The Affinity Grid: a pre-fabricated EM grid for monolayer purification

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7 January 2021

Practical procedure for coma-free alignment using caustic figure

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7 January 2021

emScope: A Tool Kit for Control and Automation of a Remote Electron Microscope

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7 January 2021

Ribosome structure determined by electron microscopy of Escherichia coli small subunits, large subunits and monomeric ribosomes

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7 January 2021

Appion: an integrated, database-driven pipeline to facilitate EM image processing

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7 January 2021

Automated 100-position specimen loader and image acquisition system for transmission electron microscopy

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7 January 2021

Automated acquisition of cryo-electron micrographs for single particle reconstruction on an FEI Tecnai electron microscope

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7 January 2021

The orthogonal tilt reconstruction method: an approach to generating single-class volumes with no missing cone for ab initio reconstruction of asymmetric particles

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7 January 2021

Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm

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7 January 2021

Monolithic microfluidic mixing-spraying devices for time-resolved cryo-electron microscopy

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7 January 2021

EMAN: semiautomated software for high-resolution single-particle reconstructions

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7 January 2021

De novo backbone trace of GroEL from single particle electron cryomicroscopy

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7 January 2021

Detecting particles in cryo-EM micrographs using learned features

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7 January 2021

ACE: automated CTF estimation

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7 January 2021

Pattern recognition and classification of images of biological macromolecules using artificial neural networks

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7 January 2021

Xmipp: An Image Processing Package for Electron Microscopy

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7 January 2021

Modular software platform for low-dose electron microscopy and tomography

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7 January 2021

Automated electron microscope tomography using robust prediction of specimen movements

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7 January 2021

Accurate determination of local defocus and specimen tilt in electron microscopy

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7 January 2021

Phase contrast electron microscopy: development of thin-film phase plates and biological applications

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7 January 2021

TOM software toolbox: acquisition and analysis for electron tomography.

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7 January 2021

Structure of the alpha beta tubulin dimer by electron crystallography

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7 January 2021

Partitivirus structure reveals a 120-subunit, helix-rich capsid with distinctive surface arches formed by quasisymmetric coat-protein dimers

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7 January 2021

Auto-accumulation method using simulated annealing enables fully automatic particle pickup completely free from a matching template or learning data

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7 January 2021

Automatic particle pickup method using a neural network has high accuracy by applying an initial weight derived from eigenimages: a new reference free method for single-particle analysis.

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7 January 2021

Negative staining and image classification — powerful tools in modern electron microscopy

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7 January 2021

The structure of p53 tumour suppressor protein reveals the basis for its functional plasticity

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7 January 2021

Atomic structure reveals the unique capsid organization of a dsRNA virus

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7 January 2021

Graphene oxide: A substrate for optimizing preparations of frozen-hydrated samples

1 reference

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7 January 2021

P22 Coat Protein Structures Reveal a Novel Mechanism for Capsid Maturation: Stability without Auxiliary Proteins or Chemical Crosslinks

1 reference

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7 January 2021

A novel neural network technique for analysis and classification of EM single-particle images.

1 reference

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7 January 2021

On lines and planes of closest fit to systems of points in space

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7 January 2021

The ribosome at improved resolution: new techniques for merging and orientation refinement in 3D cryo-electron microscopy of biological particles

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7 January 2021

A common-lines based method for determining orientations for N > 3 particle projections simultaneously

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7 January 2021

The contrast-imaging function for tilted specimens.

1 reference

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7 January 2021

A crescent-shaped ALIX dimer targets ESCRT-III CHMP4 filaments.

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7 January 2021

TYSON: robust searching, sorting, and selecting of single particles in electron micrographs.

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7 January 2021

Leginon: a system for fully automated acquisition of 1000 electron micrographs a day.

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7 January 2021

Robotic grid loading system for a transmission electron microscope

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7 January 2021

An improved holey carbon film for cryo-electron microscopy

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7 January 2021

A new 3-D reconstruction scheme applied to the 50S ribosomal subunit of E. coli

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7 January 2021

Fast automatic particle picking from cryo-electron micrographs using a locally normalized cross-correlation function: a case study

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7 January 2021

Low-dose automated electron tomography: a recent implementation

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7 January 2021

FindEM--a fast, efficient program for automatic selection of particles from electron micrographs.

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https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy

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7 January 2021

Automatic CTF correction for single particles based upon multivariate statistical analysis of individual power spectra.

1 reference

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7 January 2021

Correlative microscopy: bridging the gap between fluorescence light microscopy and cryo-electron tomography

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7 January 2021

Fast maximum-likelihood refinement of electron microscopy images

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7 January 2021

Maximum-likelihood multi-reference refinement for electron microscopy images

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7 January 2021

Image processing for electron microscopy single-particle analysis using XMIPP.

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7 January 2021

Parallel, distributed and GPU computing technologies in single-particle electron microscopy

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7 January 2021

Particle-verification for single-particle, reference-based reconstruction using multivariate data analysis and classification

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https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

A Script-Assisted Microscopy (SAM) package to improve data acquisition rates on FEI Tecnai electron microscopes equipped with Gatan CCD cameras

1 reference

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7 January 2021

SLEUTH--a fast computer program for automatically detecting particles in electron microscope images

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

A maximum-likelihood approach to single-particle image refinement.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Detecting consistent common lines in cryo-EM by voting

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Image segmentation for automatic particle identification in electron micrographs based on hidden Markov random field models and expectation maximization

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

XMIPP: a new generation of an open-source image processing package for electron microscopy.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Fast, robust, and accurate determination of transmission electron microscopy contrast transfer function.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Marker-free image registration of electron tomography tilt-series

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Error analysis in the determination of the electron microscopical contrast transfer function parameters from experimental power Spectra

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Automatic particle selection from electron micrographs using machine learning techniques

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Ab initio resolution measurement for single particle structures

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Automated cryoEM data acquisition and analysis of 284742 particles of GroEL.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Noise bias in the refinement of structures derived from single particles

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Automated molecular microscopy: the new Leginon system

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Fully automated, sequential tilt-series acquisition with Leginon

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

EMAN2: an extensible image processing suite for electron microscopy

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Electron microscopy of frozen hydrated biological specimens

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

A binary segmentation approach for boxing ribosome particles in cryo EM micrographs

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

A new resolution criterion based on spectral signal-to-noise ratios

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

The spectral signal-to-noise ratio resolution criterion: computational efficiency and statistical precision.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Multivariate statistical classification of noisy images (randomly oriented biological macromolecules).

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Angular reconstitution: a posteriori assignment of projection directions for 3D reconstruction.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

A new generation of the IMAGIC image processing system

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Single-particle electron cryo-microscopy: towards atomic resolution.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

A method for estimating the CTF in electron microscopy based on ARMA models and parameter adjustment.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

A high-throughput strategy to screen 2D crystallization trials of membrane proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

An approach to automated particle picking from electron micrographs based on reduced representation templates.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

DoG Picker and TiltPicker: software tools to facilitate particle selection in single particle electron microscopy

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

A toolbox for ab initio 3-D reconstructions in single-particle electron microscopy.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Observation of transient disorder during myosin subfragment-1 binding to actin by stopped-flow fluorescence and millisecond time resolution electron cryomicroscopy: evidence that the start of the crossbridge power stroke in muscle has variable geome

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

The use of fast Fourier transform for the estimation of power spectra: A method based on time averaging over short, modified periodograms

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

A computer-controlled spraying-freezing apparatus for millisecond time-resolution electron cryomicroscopy

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

A second generation apparatus for time-resolved electron cryo-microscopy using stepper motors and electrospray.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Accurate marker-free alignment with simultaneous geometry determination and reconstruction of tilt series in electron tomography

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Tomographic subvolume alignment and subvolume classification applied to myosin V and SIV envelope spikes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Model-based particle picking for cryo-electron microscopy

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Ab initio random model method facilitates 3D reconstruction of icosahedral particles

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Automation of random conical tilt and orthogonal tilt data collection using feature-based correlation

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Cryomesh: a new substrate for cryo-electron microscopy

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

3.88 Å structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Coma-free alignment of high resolution electron microscopes with the aid of optical diffractograms

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Automated data collection with a Tecnai 12 electron microscope: applications for molecular imaging by cryomicroscopy.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Automated image acquisition and processing using a new generation of 4K x 4K CCD cameras for cryo electron microscopic studies of macromolecular assemblies.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

JADAS: a customizable automated data acquisition system and its application to ice-embedded single particles

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

UCSF tomography: an integrated software suite for real-time electron microscopic tomographic data collection, alignment, and reconstruction

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Automated acquisition of electron microscopic random conical tilt sets

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Dual-axis target mapping and automated sequential acquisition of dual-axis EM tomographic data

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

CTF determination of images of ice-embedded single particles using a graphics interface

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Automatic particle detection through efficient Hough transforms

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Automatic particle selection: results of a comparative study

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Classification of images of biomolecular assemblies: a study of ribosomes and ribosomal subunits of Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021

Motif detection in quantum noise-limited electron micrographs by cross-correlation

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2983015-0

7 January 2021