(Q33709816)

28 July 2017

title

A global optimization algorithm for protein surface alignment (English)

1 reference

28 July 2017

main subject

optimization algorithm

1 reference

Paola Bertolazzi

1

1 reference

28 July 2017

Concettina Guerra

series ordinal

2

1 reference

28 July 2017

Giampaolo Liuzzi

series ordinal

3

1 reference

28 July 2017

publication date

29 September 2010

1 reference

28 July 2017

1 reference

28 July 2017

volume

11

1 reference

28 July 2017

page(s)

488

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2105-11-488

28 July 2017

exact match

0 references

cites work

MolLoc: a web tool for the local structural alignment of molecular surfaces

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2957401

MultiBind and MAPPIS: webservers for multiple alignment of protein 3D-binding sites and their interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2957401

FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2957401

Moment invariants as shape recognition technique for comparing protein binding sites.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2957401

Shape variation in protein binding pockets and their ligands

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2957401

Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2957401

21 June 2018

1 reference

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Recognition of functional sites in protein structures.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2957401

21 June 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2957401

Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2957401

Comprehensive assessment of automatic structural alignment against a manual standard, the scop classification of proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2957401

SCOP: a structural classification of proteins database for the investigation of sequences and structures

21 June 2018

1 reference

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Binding balls: fast detection of binding sites using a property of spherical Fourier transform

21 June 2018

1 reference

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Cavity-aware motifs reduce false positives in protein function prediction.

30 October 2018

1 reference

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Ultrafast shape recognition to search compound databases for similar molecular shapes.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2957401

The multiple common point set problem and its application to molecule binding pattern detection

30 October 2018

1 reference

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Conformational diversity of ligands bound to proteins

30 October 2018

1 reference

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The SuMo server: 3D search for protein functional sites.

30 October 2018

1 reference

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30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2957401

SURFCOMP: a novel graph-based approach to molecular surface comparison.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2957401

Identification of protein functions from a molecular surface database, eF-site.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2957401

A new method to detect related function among proteins independent of sequence and fold homology.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2957401

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20920230

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Effective labeling of molecular surface points for cavity detection and location of putative binding sites

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20920230

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-11-488

1 reference

journals/bmcbi/BertolazziGL10

28 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

28 July 2017

1 reference