(Q30341546)

20 June 2017

Recognition of functional sites in protein structures. (English)

1 reference

20 June 2017

2

Ruth Nussinov

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20 June 2017

3

Haim J Wolfson

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20 June 2017

Alexandra Shulman-Peleg

series ordinal

1

1 reference

PubMed ID

15147845

20 June 2017

language of work or name

English

0 references

publication date

1 June 2004

1 reference

Journal of Molecular Biology

20 June 2017

1 reference

20 June 2017

339

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20 June 2017

607-633

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20 June 2017

3

1 reference

The ASTRAL compendium for protein structure and sequence analysis

20 June 2017

1 reference

12 December 2020

Structure comparison and structure patterns.

1 reference

12 December 2020

Predicting molecular interactions in silico: II. Protein-protein and protein-drug docking

1 reference

12 December 2020

Efficient detection of three-dimensional structural motifs in biological macromolecules by computer vision techniques

1 reference

12 December 2020

One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions

1 reference

12 December 2020

Relibase: design and development of a database for comprehensive analysis of protein-ligand interactions

1 reference

12 December 2020

Derivation of 3D coordinate templates for searching structural databases: application to Ser-His-Asp catalytic triads in the serine proteinases and lipases

1 reference

12 December 2020

ASTRAL compendium enhancements

1 reference

12 December 2020

Searching for functional sites in protein structures.

1 reference

12 December 2020

Protein recognition of adenylate: an example of a fuzzy recognition template.

1 reference

12 December 2020

Detection and geometric modeling of molecular surfaces and cavities using digital mathematical morphological operations

1 reference

12 December 2020

SCOP: a structural classification of proteins database for the investigation of sequences and structures

1 reference

12 December 2020

Crystal structures of adenine phosphoribosyltransferase from Leishmania donovani

1 reference

12 December 2020

Lipid-binding proteins: a family of fatty acid and retinoid transport proteins

1 reference

12 December 2020

A graph-theoretic approach to the identification of three-dimensional patterns of amino acid side-chains in protein structures

1 reference

12 December 2020

High-resolution structures of adenylate kinase from yeast ligated with inhibitor Ap5A, showing the pathway of phosphoryl transfer

1 reference

12 December 2020

Adenine recognition: a motif present in ATP-, CoA-, NAD-, NADP-, and FAD-dependent proteins.

1 reference

12 December 2020

Multiple diverse ligands binding at a single protein site: a matter of pre-existing populations

1 reference

12 December 2020

The Protein Data Bank

1 reference

12 December 2020

Fast prediction and visualization of protein binding pockets with PASS.

1 reference

12 December 2020

An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis.

1 reference

12 December 2020

Carboxyl proteinase from Pseudomonas defines a novel family of subtilisin-like enzymes

1 reference

12 December 2020

CASTp: Computed Atlas of Surface Topography of proteins

1 reference

12 December 2020

Principles of docking: An overview of search algorithms and a guide to scoring functions

1 reference

12 December 2020

The ASTRAL Compendium in 2004

1 reference

12 December 2020

SURFNET: a program for visualizing molecular surfaces, cavities, and intermolecular interactions

1 reference

12 December 2020

The structure of Staphylococcus aureus epidermolytic toxin A, an atypic serine protease, at 1.7 A resolution

1 reference

12 December 2020

Coronavirus main proteinase (3CLpro) structure: basis for design of anti-SARS drugs

1 reference

12 December 2020

A consensus-binding structure for adenine at the atomic level permits searching for the ligand site in a wide spectrum of adenine-containing complexes

1 reference

12 December 2020

A new method to detect related function among proteins independent of sequence and fold homology.

1 reference

12 December 2020

Virtual screening: an effective tool for lead structure discovery?

1 reference

12 December 2020

Predicting molecular interactions in silico: I. A guide to pharmacophore identification and its applications to drug design

1 reference

12 December 2020

The crystal structures of severe acute respiratory syndrome virus main protease and its complex with an inhibitor

1 reference

12 December 2020

Crystal structure and thermodynamic analysis of human brain fatty acid-binding protein

1 reference

12 December 2020

Inferring functional relationships of proteins from local sequence and spatial surface patterns

1 reference

12 December 2020

Structure-based identification of a novel NTPase from Methanococcus jannaschii

1 reference

12 December 2020

The crystal structure of the liver fatty acid-binding protein. A complex with two bound oleates

1 reference

12 December 2020

Molecular shape comparisons in searches for active sites and functional similarity.

1 reference

12 December 2020

Identification of protein functions from a molecular surface database, eF-site.

1 reference

12 December 2020

Molecular recognition via face center representation of a molecular surface.

1 reference

12 December 2020

Structure-based assignment of the biochemical function of a hypothetical protein: a test case of structural genomics

1 reference

12 December 2020

High-throughput docking for lead generation

1 reference

12 December 2020

A method for simultaneous alignment of multiple protein structures

1 reference

12 December 2020

A computer vision based technique for 3-D sequence-independent structural comparison of proteins

1 reference

12 December 2020

Computational methods for the structural alignment of molecules

1 reference

12 December 2020

TESS: a geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites

1 reference

12 December 2020

BioInfo3D: a suite of tools for structural bioinformatics

1 reference

12 December 2020

A geometric approach to macromolecule-ligand interactions

1 reference

12 December 2020

Searching for patterns of amino acids in 3D protein structures

1 reference

12 December 2020

A review of protein-small molecule docking methods

1 reference

12 December 2020

Identification of protein biochemical functions by similarity search using the molecular surface database eF-site

1 reference

12 December 2020

Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design

1 reference

12 December 2020

Molecular surface representations by sparse critical points

1 reference

12 December 2020

Solvent-accessible surfaces of proteins and nucleic acids

1 reference

12 December 2020

Sequence and structural analysis of cellular retinoic acid-binding proteins reveals a network of conserved hydrophobic interactions

1 reference

12 December 2020

Principles of docking: An overview of search algorithms and a guide to scoring functions

1 reference

12 December 2020

10.1016/J.JMB.2004.04.012

Identifiers

DOI

1 reference

20 June 2017

1 reference

PubMed ID

15147845