(Q33740219)

29 July 2017

title

Assigning statistical significance to proteotypic peptides via database searches (English)

1 reference

29 July 2017

1 reference

Gelio Alves

1

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29 July 2017

Aleksey Y Ogurtsov

series ordinal

2

1 reference

29 July 2017

Yi-Kuo Yu

series ordinal

3

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29 July 2017

publication date

3 November 2010

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29 July 2017

published in

Journal of Proteomics

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29 July 2017

volume

74

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29 July 2017

issue

2

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29 July 2017

page(s)

199-211

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

29 July 2017

cites work

1 reference

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21 June 2018

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RAId_DbS: mass-spectrometry based peptide identification web server with knowledge integration

21 June 2018

1 reference

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High quality catalog of proteotypic peptides from human heart

21 June 2018

1 reference

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Enhancing peptide identification confidence by combining search methods

21 June 2018

1 reference

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PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186061

RAId_DbS: peptide identification using database searches with realistic statistics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186061

PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells

21 June 2018

1 reference

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Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186061

Development and validation of a spectral library searching method for peptide identification from MS/MS.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186061

Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186061

Using annotated peptide mass spectrum libraries for protein identification

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186061

General framework for developing and evaluating database scoring algorithms using the TANDEM search engine

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186061

Improving sensitivity in shotgun proteomics using a peptide-centric database with reduced complexity: protease cleavage and SCX elution rules from data mining of MS/MS spectra

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186061

Scoring proteomes with proteotypic peptide probes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186061

The use of proteotypic peptide libraries for protein identification

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186061

A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186061

Method to compare collision-induced dissociation spectra of peptides: potential for library searching and subtractive analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186061

A refined method to calculate false discovery rates for peptide identification using decoy databases.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186061

A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186061

Computational prediction of proteotypic peptides for quantitative proteomics.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186061

The absolute quantification strategy: a general procedure for the quantification of proteins and post-translational modifications

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186061

Statistical Characterization of a 1D Random Potential Problem - with applications in score statistics of MS-based peptide sequencing

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21055489

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.JPROT.2010.10.005

1 reference

29 July 2017

1 reference

29 July 2017

1 reference