(Q33741631)

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Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice

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scholarly article

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Europe PubMed Central

PubMed publication ID

29 July 2017

Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice (English)

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

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Falk Hildebrand

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Falk Hildebrand

1

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Adrian Liston

7

0 references

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Jeroen Raes

8

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Peter Vandenabeele

object named as

Peter Vandenabeele

6

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author name string

Thi Loan Anh Nguyen

2

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Brigitta Brinkman

3

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Roberto Garcia Yunta

4

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Benedicte Cauwe

5

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

publication date

24 January 2013

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

14

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

1

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

R4

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

The gut microbiota of toll-like receptor 2-deficient mice exhibits lineage-specific modifications.

1 reference

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Diversity, stability and resilience of the human gut microbiota

1 reference

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21 June 2018

Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome.

1 reference

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21 June 2018

Intestinal inflammation targets cancer-inducing activity of the microbiota.

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Consumption of different soymilk formulations differentially affects the gut microbiomes of overweight and obese men.

1 reference

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21 June 2018

Human gut microbiome viewed across age and geography

1 reference

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21 June 2018

Early life antibiotic-driven changes in microbiota enhance susceptibility to allergic asthma

1 reference

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21 June 2018

Fecal calprotectin is a surrogate marker for endoscopic lesions in inflammatory bowel disease

1 reference

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21 June 2018

Microbiota downregulates dendritic cell expression of miR-10a, which targets IL-12/IL-23p40.

1 reference

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21 June 2018

Gut microbiome metagenomics analysis suggests a functional model for the development of autoimmunity for type 1 diabetes

1 reference

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21 June 2018

Caspase deficiency alters the murine gut microbiome

1 reference

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21 June 2018

Linking long-term dietary patterns with gut microbial enterotypes

1 reference

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21 June 2018

Bile acid is a host factor that regulates the composition of the cecal microbiota in rats.

1 reference

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21 June 2018

Prebiotic effects of wheat arabinoxylan related to the increase in bifidobacteria, Roseburia and Bacteroides/Prevotella in diet-induced obese mice

1 reference

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21 June 2018

A comparative analysis of the effect of antibiotic treatment and enteric infection on intestinal homeostasis

1 reference

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21 June 2018

Subspecific origin and haplotype diversity in the laboratory mouse

1 reference

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21 June 2018

Predicting a human gut microbiota's response to diet in gnotobiotic mice

1 reference

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21 June 2018

NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Enterotypes of the human gut microbiome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Microbial ecology of the murine gut associated with the development of dextran sodium sulfate-induced colitis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

The genome of Akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Colonic mucosal DNA methylation, immune response, and microbiome patterns in Toll-like receptor 2-knockout mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Numerical ecology validates a biogeographical distribution and gender-based effect on mucosa-associated bacteria along the human colon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Regional mucosa-associated microbiota determine physiological expression of TLR2 and TLR4 in murine colon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Strain-specific polymorphisms in Paneth cell α-defensins of C57BL/6 mice and evidence of vestigial myeloid α-defensin pseudogenes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Disease phenotype and genotype are associated with shifts in intestinal-associated microbiota in inflammatory bowel diseases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Epithelial crosstalk at the microbiota-mucosal interface.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Search and clustering orders of magnitude faster than BLAST

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Creating and characterizing communities of human gut microbes in gnotobiotic mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Gut-residing segmented filamentous bacteria drive autoimmune arthritis via T helper 17 cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Toward defining the autoimmune microbiome for type 1 diabetes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Transcriptional activity of the dominant gut mucosal microbiota in chronic inflammatory bowel disease patients

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

QIIME allows analysis of high-throughput community sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

A human gut microbial gene catalogue established by metagenomic sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Like will to like: abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Site and strain-specific variation in gut microbiota profiles and metabolism in experimental mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Bacterial community variation in human body habitats across space and time

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Enteric defensins are essential regulators of intestinal microbial ecology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

High-fat diet determines the composition of the murine gut microbiome independently of obesity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Human gut microbiota in obesity and after gastric bypass

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

A core gut microbiome in obese and lean twins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

NKT cell-dependent amelioration of a mouse model of multiple sclerosis by altering gut flora

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Innate immunity and intestinal microbiota in the development of Type 1 diabetes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Predominant role of host genetics in controlling the composition of gut microbiota

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Factors influencing the establishment of the intestinal microbiota in infancy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Increased gastrointestinal permeability and gut inflammation in children with functional abdominal pain and irritable bowel syndrome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Species variation in the fecal metabolome gives insight into differential gastrointestinal function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Enterohepatic Helicobacter species are prevalent in mice from commercial and academic institutions in Asia, Europe, and North America

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

An obesity-associated gut microbiome with increased capacity for energy harvest

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Distance-based tests for homogeneity of multivariate dispersions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Obesity alters gut microbial ecology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Interactions between commensal intestinal bacteria and the immune system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Creating and maintaining the gastrointestinal ecosystem: what we know and need to know from gnotobiology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

The detection of disease clustering and a generalized regression approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

21 June 2018

Structure, function and diversity of the healthy human microbiome

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-1-R4

21 January 2018

High temporal and inter-individual variation detected in the human ileal microbiota

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-1-R4

21 January 2018

Regulation of the polymeric immunoglobulin receptor in intestinal epithelial cells by Enterobacteriaceae: implications for mucosal homeostasis.

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-1-R4

21 January 2018

Interactions between gut microbiota, host genetics and diet relevant to development of metabolic syndromes in mice

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-1-R4

21 January 2018

Short pyrosequencing reads suffice for accurate microbial community analysis

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-1-R4

21 January 2018

A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-1-R4

21 January 2018

Increased serum IgA and IgM against LPS of enterobacteria in chronic fatigue syndrome (CFS): indication for the involvement of gram-negative enterobacteria in the etiology of CFS and for the presence of an increased gut-intestinal permeability.

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-1-R4

21 January 2018

Isolation of DNA from bacterial samples of the human gastrointestinal tract.

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-1-R4

21 January 2018

Altered gut microbiota composition in immune-impaired Nod2(-/-) mice

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

30 October 2018

https://api.crossref.org/works/10.1186%2FGB-2013-14-1-R4

21 January 2018

Obesity, metabolic syndrome, and microbiota: multiple interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

30 October 2018

Mode of delivery affects the bacterial community in the newborn gut.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

30 October 2018

Genetic factors at the enterocyte level account for variations in intestinal cholesterol absorption efficiency among inbred strains of mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

30 October 2018

Phenotypic characterization of lith genes that determine susceptibility to cholesterol cholelithiasis in inbred mice. Pathophysiology Of biliary lipid secretion.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053703

30 October 2018

Quantitative PCR assays for mouse enteric flora reveal strain-dependent differences in composition that are influenced by the microenvironment

1 reference

https://pubmed.ncbi.nlm.nih.gov/23347395

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genotype Is a Stronger Determinant than Sex of the Mouse Gut Microbiota

1 reference

https://pubmed.ncbi.nlm.nih.gov/23347395

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Influence of mother's intestinal microbiota on gut colonization in the infant

1 reference

https://pubmed.ncbi.nlm.nih.gov/23347395

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Role of gut commensal microflora in the development of experimental autoimmune encephalomyelitis

1 reference

https://pubmed.ncbi.nlm.nih.gov/23347395

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/GB-2013-14-1-R4

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

ResearchGate publication ID

0 references

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