(Q33741775)

29 July 2017

title

Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers (English)

1 reference

29 July 2017

16

Robert Tibshirani

0 references

Daniela Witten

12

Daniela M Witten

0 references

Joseph W Foley

Joseph W Foley

11

0 references

Ryan Flynn

Ryan A Flynn

14

0 references

Matt van de Rijn

18

Matt van de Rijn

1 reference

29 July 2017

15

Jonathan R Pollack

1 reference

29 July 2017

5

Shirley X Zhu

1 reference

29 July 2017

Alayne L Brunner

1

1 reference

29 July 2017

Andrew H Beck

2

1 reference

29 July 2017

Badreddin Edris

3

1 reference

29 July 2017

Robert T Sweeney

4

1 reference

29 July 2017

Rui Li

6

1 reference

29 July 2017

Kelli Montgomery

7

1 reference

29 July 2017

Sushama Varma

8

1 reference

29 July 2017

Thea Gilks

9

1 reference

29 July 2017

Xiangqian Guo

10

1 reference

29 July 2017

Craig P Giacomini

13

1 reference

29 July 2017

Howard Y Chang

17

1 reference

29 July 2017

Robert B West

19

1 reference

29 July 2017

publication date

28 August 2012

1 reference

29 July 2017

1 reference

29 July 2017

volume

13

1 reference

29 July 2017

issue

8

1 reference

29 July 2017

page(s)

R75

1 reference

https://scigraph.springernature.com/pub.10.1186/gb-2012-13-8-r75

29 July 2017

exact match

0 references

cites work

The Long Non-Coding RNAs: A New (P)layer in the "Dark Matter"

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

14-3-3 fusion oncogenes in high-grade endometrial stromal sarcoma

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Long noncoding RNAs in cell biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Non-coding RNAs as regulators of embryogenesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Long intergenic noncoding RNAs: new links in cancer progression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

lncRNAdb: a reference database for long noncoding RNAs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Long noncoding RNAs with enhancer-like function in human cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Large non-coding RNAs: missing links in cancer?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Genome-wide computational identification and manual annotation of human long noncoding RNA genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Most "dark matter" transcripts are associated with known genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Long non-coding RNAs in nervous system function and disease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

3'-end sequencing for expression quantification (3SEQ) from archival tumor samples

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Chimeric transcript discovery by paired-end transcriptome sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Evolution and functions of long noncoding RNAs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

GENCODE: producing a reference annotation for ENCODE

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

The novel marker, DOG1, is expressed ubiquitously in gastrointestinal stromal tumors irrespective of KIT or PDGFRA mutation status

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Significance analysis of microarrays applied to the ionizing radiation response

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Identification of a tissue-specific putative transcription factor in breast tissue by serological screening of a breast cancer library

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Molecular portraits of human breast tumours

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

Molecular characterisation of soft tissue tumours: a gene expression study

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FGB-2012-13-8-R75

Long noncoding RNAs, chromatin, and development.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053743

30 October 2018

Identifiers

DOI

10.1186/GB-2012-13-8-R75

1 reference

Dimensions Publication ID

29 July 2017

0 references

1 reference

29 July 2017

1 reference