(Q33741813)

29 July 2017

title

Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade (English)

1 reference

29 July 2017

0 references

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9

Ramunas Stepanauskas

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Tanja Woyke

6

Tanja Woyke

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Alexander Sczyrba

5

Katarzyna Zaremba-Niedzwiedzka

Alexander Sczyrba

0 references

1

Katarzyna Zaremba-Niedzwiedzka

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Stefan Bertilsson

8

Stefan Bertilsson

1 reference

29 July 2017

10

0 references

Johan Viklund

2

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author name string

Weizhou Zhao

3

1 reference

29 July 2017

Jennifer Ast

4

1 reference

29 July 2017

Katherina McMahon

7

1 reference

29 July 2017

Siv G E Andersson

10

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29 July 2017

publication date

28 November 2013

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29 July 2017

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29 July 2017

volume

14

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29 July 2017

issue

11

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29 July 2017

page(s)

R130

1 reference

Genetic diversity of Bartonella quintana in macaques suggests zoonotic origin of trench fever

29 July 2017

cites work

1 reference

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21 June 2018

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21 June 2018

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Streamlining and core genome conservation among highly divergent members of the SAR11 clade

21 June 2018

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21 June 2018

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Insights from genomic comparisons of genetically monomorphic bacterial pathogens

21 June 2018

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21 June 2018

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21 June 2018

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Independent genome reduction and phylogenetic reclassification of the oceanic SAR11 clade

21 June 2018

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High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton.

21 June 2018

1 reference

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Seasonal bloom dynamics and ecophysiology of the freshwater sister clade of SAR11 bacteria 'that rule the waves' (LD12).

21 June 2018

1 reference

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21 June 2018

1 reference

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High-quality draft assemblies of mammalian genomes from massively parallel sequence data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

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21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved

21 June 2018

1 reference

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TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

21 June 2018

1 reference

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TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses

21 June 2018

1 reference

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Explaining microbial population genomics through phage predation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

Inference of microbial recombination rates from metagenomic data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

Infrequent marine-freshwater transitions in the microbial world.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

Prokaryotic genomes and diversity in surface ocean waters: interrogating the global ocean sampling metagenome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

Recent developments in the MAFFT multiple sequence alignment program

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

High intraspecific recombination rate in a native population of Candidatus pelagibacter ubique (SAR11).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

PAML 4: phylogenetic analysis by maximum likelihood

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

Inference of bacterial microevolution using multilocus sequence data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

Proteorhodopsin in the ubiquitous marine bacterium SAR11.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

MAFFT version 5: improvement in accuracy of multiple sequence alignment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

Versatile and open software for comparing large genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

Multilocus Sequence Typing and Evolutionary Relationships among the Causative Agents of Melioidosis and Glanders, Burkholderia pseudomallei and Burkholderia mallei

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053759

A comparison of homologous recombination rates in bacteria and archaea.

21 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-11-R130

Infrequent transitions between saline and fresh waters in one of the most abundant microbial lineages (SAR11).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-11-R130

Evolution of pathogenicity in the Bacillus cereus group

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-11-R130

Metagenomic sequencing of an in vitro-simulated microbial community

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-11-R130

Nearly identical 16S rRNA sequences recovered from lakes in North America and Europe indicate the existence of clades of globally distributed freshwater bacteria

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24286338

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2013-14-11-R130

1 reference

29 July 2017

1 reference

29 July 2017

1 reference