(Q33744456)

29 July 2017

FITBAR: a web tool for the robust prediction of prokaryotic regulons (English)

1 reference

29 July 2017

Jacques Oberto

1

1 reference

29 July 2017

11 November 2010

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29 July 2017

1 reference

29 July 2017

11

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29 July 2017

554

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Creative Commons Attribution 2.0 Generic

29 July 2017

start time

11 November 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-11-554

0 references

cites work

RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach

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Inferring binding energies from selected binding sites

21 June 2018

1 reference

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RSAT: regulatory sequence analysis tools

21 June 2018

1 reference

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Switching control of expression of ptsG from the Mlc regulon to the NagC regulon

21 June 2018

1 reference

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Assessment of composite motif discovery methods

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098098

A comparison of common programming languages used in bioinformatics.

21 June 2018

1 reference

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BAGET: a web server for the effortless retrieval of prokaryotic gene context and sequence

21 June 2018

1 reference

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A survey of DNA motif finding algorithms

21 June 2018

1 reference

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Comparative analysis of regulatory motif discovery tools for transcription factor binding sites

21 June 2018

1 reference

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Improved benchmarks for computational motif discovery

21 June 2018

1 reference

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Statistical significance in biological sequence analysis.

21 June 2018

1 reference

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A survey of motif discovery methods in an integrated framework

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098098

On the correlation between genomic G+C content and optimal growth temperature in prokaryotes: data quality and confounding factors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098098

Function and expression of an N-acetylneuraminic acid-inducible outer membrane channel in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098098

Assessing computational tools for the discovery of transcription factor binding sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098098

In silico representation and discovery of transcription factor binding sites

21 June 2018

1 reference

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PredictRegulon: a web server for the prediction of the regulatory protein binding sites and operons in prokaryote genomes.

21 June 2018

1 reference

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Evolutionary comparisons suggest many novel cAMP response protein binding sites in Escherichia coli

21 June 2018

1 reference

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A biophysical approach to transcription factor binding site discovery

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098098

Physiological studies of Escherichia coli strain MG1655: growth defects and apparent cross-regulation of gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098098

BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098098

DNA binding sites: representation and discovery

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098098

Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098098

Combining evidence using p-values: application to sequence homology searches

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098098

MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098098

Computer methods to locate signals in nucleic acid sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098098

Information content of binding sites on nucleotide sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098098

Measuring the accuracy of diagnostic systems

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098098

Sequence logos: a new way to display consensus sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098098

Repression of galP, the galactose transporter in Escherichia coli, requires the specific regulator of N-acetylglucosamine metabolism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098098

Virtual Footprint and PRODORIC: an integrative framework for regulon prediction in prokaryotes.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098098

CIS: compound importance sampling method for protein-DNA binding site p-value estimation.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098098

Determination of local statistical significance of patterns in Markov sequences with application to promoter element identification

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098098

30 October 2018

Identifiers

DOI

10.1186/1471-2105-11-554

1 reference

29 July 2017

journals/bmcbi/Oberto10

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

29 July 2017

1 reference

PubMed ID

21070640