(Q33755126)

29 July 2017

title

Few mutations in the 5' leader region mediate fitness recovery of debilitated human immunodeficiency type 1 viruses (English)

1 reference

29 July 2017

Antonio V Bordería

2

0 references

Cecilio Lopez-Galindez

object named as

Cecilio López-Galíndez

series ordinal

4

0 references

Esteban Domingo Solans

object named as

Esteban Domingo

series ordinal

3

0 references

author name string

Eloísa Yuste

series ordinal

1

1 reference

29 July 2017

publication date

1 May 2005

1 reference

29 July 2017

number of pages

7

1 reference

based on heuristic

inferred from page(s)

published in

Journal of Virology

1 reference

29 July 2017

volume

79

1 reference

29 July 2017

issue

9

1 reference

29 July 2017

page(s)

5421-5427

1 reference

Forced selection of a human immunodeficiency virus type 1 variant that uses a non-self tRNA primer for reverse transcription: involvement of viral RNA sequences and the reverse transcriptase enzyme

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

Molecular basis of fitness loss and fitness recovery in vesicular stomatitis virus

21 June 2018

1 reference

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Adaptation to the deleterious effects of antimicrobial drug resistance mutations by compensatory evolution

21 June 2018

1 reference

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Synchronous loss of quasispecies memory in parallel viral lineages: a deterministic feature of viral quasispecies

21 June 2018

1 reference

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THE RELATION OF RECOMBINATION TO MUTATIONAL ADVANCE

21 June 2018

1 reference

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Modeling viral genome fitness evolution associated with serial bottleneck events: evidence of stationary states of fitness

21 June 2018

1 reference

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Variability in the human immunodeficiency virus type 1 gp120 Env protein linked to phenotype-associated changes in the V3 loop

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

The tRNA primer activation signal in the human immunodeficiency virus type 1 genome is important for initiation and processive elongation of reverse transcription

21 June 2018

1 reference

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Mechanistic aspects of HIV-1 reverse transcription initiation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

Initiation of HIV-1 reverse transcription is regulated by a primer activation signal

21 June 2018

1 reference

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Transition between stochastic evolution and deterministic evolution in the presence of selection: general theory and application to virology.

21 June 2018

1 reference

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Unusual distribution of mutations associated with serial bottleneck passages of human immunodeficiency virus type 1

21 June 2018

1 reference

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Genetic analysis of HIV-1 samples from Spain

21 June 2018

1 reference

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Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

Drastic fitness loss in human immunodeficiency virus type 1 upon serial bottleneck events.

21 June 2018

1 reference

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Multiple molecular pathways for fitness recovery of an RNA virus debilitated by operation of Muller's ratchet

21 June 2018

1 reference

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In vivo evolution of HIV-1 co-receptor usage and sensitivity to chemokine-mediated suppression.

21 June 2018

1 reference

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RNA virus mutations and fitness for survival

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

Evolution of the human immunodeficiency virus type 1 subtype-specific V3 domain is confined to a sequence space with a fixed distance to the subtype consensus.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

Genetic lesions associated with Muller's ratchet in an RNA virus.

21 June 2018

1 reference

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Mechanisms of retroviral mutation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

Structure and function of the human immunodeficiency virus leader RNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

In vivo sequence diversity of the protease of human immunodeficiency virus type 1: presence of protease inhibitor-resistant variants in untreated subjects.

21 June 2018

1 reference

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Dilute passage promotes expression of genetic and phenotypic variants of human immunodeficiency virus type 1 in cell culture.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

V3 loop of the human immunodeficiency virus type 1 Env protein: interpreting sequence variability.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

Pol gene quasispecies of human immunodeficiency virus: mutations associated with drug resistance in virus from patients undergoing no drug therapy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

Genetic differences between blood- and brain-derived viral sequences from human immunodeficiency virus type 1-infected patients: evidence of conserved elements in the V3 region of the envelope protein of brain-derived sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

Genetic variability of the human immunodeficiency virus: statistical and biological issues

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

Exponential increases of RNA virus fitness during large population transmissions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

The fastest genome evolution ever described: HIV variation in situ

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

Aligning amino acid sequences: Comparison of commonly used methods

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

Selforganization of matter and the evolution of biological macromolecules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

Infection of HTLV-III/LAV in HTLV-I-carrying cells MT-2 and MT-4 and application in a plaque assay

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

Fitness of RNA virus decreased by Muller's ratchet

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

Broad spectrum of in vivo forward mutations, hypermutations, and mutational hotspots in a retroviral shuttle vector after a single replication cycle: substitutions, frameshifts, and hypermutations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

Quantitation of relative fitness and great adaptability of clonal populations of RNA viruses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

Rapid and simple method for purification of nucleic acids

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

Rapid fitness losses in mammalian RNA virus clones due to Muller's ratchet

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

HIV evolution: CTL escape mutation and reversion after transmission

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

Genetic relationships determined by a DNA heteroduplex mobility assay: analysis of HIV-1 env genes

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

Comparison of in vivo plasma and peripheral blood mononuclear cell HIV-1 quasi-species to short-term tissue culture isolates: an analysis of tat and C2-V3 env regions.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1082768

Temporal fluctuations in HIV quasispecies in vivo are not reflected by sequential HIV isolations

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15827156

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

1 reference

https://pubmed.ncbi.nlm.nih.gov/15827156

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/JVI.79.9.5421-5427.2005

1 reference

29 July 2017

1 reference

29 July 2017

1 reference