(Q33761776)

29 July 2017

title

Statistical coevolution analysis and molecular dynamics: identification of amino acid pairs essential for catalysis (English)

1 reference

29 July 2017

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R August Estabrook

1

1 reference

29 July 2017

Jia Luo

2

1 reference

29 July 2017

Matthew M Purdy

3

1 reference

29 July 2017

Vyas Sharma

4

1 reference

29 July 2017

Paul Weakliem

5

1 reference

29 July 2017

Thomas C Bruice

6

1 reference

29 July 2017

Norbert O Reich

7

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29 July 2017

language of work or name

English

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publication date

18 January 2005

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Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

published in

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29 July 2017

volume

102

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29 July 2017

issue

4

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29 July 2017

page(s)

994-999

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Thermal-activated protein mobility and its correlation with catalysis in thermophilic alcohol dehydrogenase

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545822

Epigenetics in human disease and prospects for epigenetic therapy

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545822

Ligand-dependent dynamics and intramolecular signaling in a PDZ domain

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545822

Allosteric determinants in guanine nucleotide-binding proteins

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545822

A perspective on enzyme catalysis.

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545822

Many paths to methyltransfer: a chronicle of convergence

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545822

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545822

Evolutionarily conserved networks of residues mediate allosteric communication in proteins

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545822

Ten-nanosecond molecular dynamics simulation of the motions of the horse liver alcohol dehydrogenase.PhCH2O- complex

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545822

The role of dynamics in enzyme activity

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545822

Enzyme dynamics during catalysis

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545822

Enzyme specificity under dynamic control II: Principal component analysis of alpha-lytic protease using global and local solvent boundary conditions

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545822

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545822

Evolutionarily conserved pathways of energetic connectivity in protein families

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545822

Active site dynamics of the HhaI methyltransferase: insights from computer simulation

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545822

Structure of a binary complex of HhaI methyltransferase with S-adenosyl-L-methionine formed in the presence of a short non-specific DNA oligonucleotide

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545822

DNA containing 4'-thio-2'-deoxycytidine inhibits methylation by HhaI methyltransferase

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545822

Crystal structure of the HhaI DNA methyltransferase complexed with S-adenosyl-L-methionine

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545822

HhaI methyltransferase flips its target base out of the DNA helix

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545822

The DNA (cytosine-5) methyltransferases

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545822

Collective motions in proteins: A covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545822

A functional role for correlated motion in the N-terminal RNA-binding domain of human U1A protein.

22 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409128102

Structural determinants of allosteric ligand activation in RXR heterodimers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409128102

Mechanism-based inhibition of an essential bacterial adenine DNA methyltransferase: rationally designed antibiotics

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409128102

The mechanism of target base attack in DNA cytosine carbon 5 methylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409128102

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409128102

The coupling of tight DNA binding and base flipping: identification of a conserved structural motif in base flipping enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409128102

Crystal structure of the HhaI DNA methyltransferase

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545822

Reorientational Eigenmode Dynamics: A Combined MD/NMR Relaxation Analysis Method for Flexible Parts in Globular Proteins

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15657135

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Covariation of backbone motion throughout a small protein domain

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15657135

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

All-atom empirical potential for molecular modeling and dynamics studies of proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15657135

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0409128102

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference