Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q33764799)
Watch
English
FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares
scientific article
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
4060023
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24949242%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
title
FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
4060023
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24949242%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
main subject
least squares method
0 references
author
Bas E. Dutilh
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
4060023
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24949242%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
Robert A Edwards
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMC publication ID
4060023
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24949242%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
author name string
Genivaldo Gueiros Z Silva
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
4060023
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24949242%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
Daniel A Cuevas
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
4060023
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24949242%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
publication date
5 June 2014
1 reference
stated in
Europe PubMed Central
PMC publication ID
4060023
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24949242%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
published in
PeerJ
1 reference
stated in
Europe PubMed Central
PMC publication ID
4060023
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24949242%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
volume
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
4060023
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24949242%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
page(s)
e425
1 reference
stated in
Europe PubMed Central
PMC publication ID
4060023
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24949242%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
cites work
Reconstructing the genomic content of microbiome taxa through shotgun metagenomic deconvolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
The binning of metagenomic contigs for microbial physiology of mixed cultures
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
Parallel-META: efficient metagenomic data analysis based on high-performance computation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
Classification of metagenomic sequences: methods and challenges
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
Metagenomic abundance estimation and diagnostic testing on species level.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
Taxonomic and functional microbial signatures of the endemic marine sponge Arenosclera brasiliensis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
Structure, function and diversity of the healthy human microbiome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
Metagenomic microbial community profiling using unique clade-specific marker genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
GemSIM: general, error-model based simulator of next-generation sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
The oral metagenome in health and disease
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
Mixture models for analysis of the taxonomic composition of metagenomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
PhymmBL expanded: confidence scores, custom databases, parallelization and more
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
RAIphy: phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
Use of simulated data sets to evaluate the fidelity of metagenomic processing methods
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
Accurate phylogenetic classification of variable-length DNA fragments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
Metagenomics: application of genomics to uncultured microorganisms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
A greedy algorithm for aligning DNA sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
Prokaryotes: the unseen majority
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4060023
retrieved
22 June 2018
Microbiology. Genomes from metagenomics.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.7717%2FPEERJ.425
retrieved
21 January 2018
Identifiers
DOI
10.7717/PEERJ.425
1 reference
stated in
Europe PubMed Central
PMC publication ID
4060023
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24949242%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
PMC publication ID
4060023
1 reference
stated in
Europe PubMed Central
PMC publication ID
4060023
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24949242%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
PubMed publication ID
24949242
1 reference
stated in
Europe PubMed Central
PMC publication ID
4060023
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24949242%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
ResearchGate publication ID
263294683
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit
