(Q33778051)

29 July 2017

title

Gene duplication and the evolution of ribosomal protein gene regulation in yeast (English)

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29 July 2017

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6

Aviv Regev

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29 July 2017

Ilan Wapinski

1

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29 July 2017

Jenna Pfiffner

2

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29 July 2017

Courtney French

3

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29 July 2017

Amanda Socha

4

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29 July 2017

Dawn Anne Thompson

5

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29 July 2017

language of work or name

English

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publication date

8 March 2010

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Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

published in

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29 July 2017

volume

107

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29 July 2017

issue

12

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29 July 2017

page(s)

5505-5510

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From elements to modules: regulatory evolution in Ascomycota fungi

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

Rearrangements of the transcriptional regulatory networks of metabolic pathways in fungi

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

High-resolution DNA-binding specificity analysis of yeast transcription factors

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

Turning a hobby into a job: how duplicated genes find new functions

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

Transcription factor and microRNA motif discovery: the Amadeus platform and a compendium of metazoan target sets

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

Transcription factor substitution during the evolution of fungal ribosome regulation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

The evolution of combinatorial gene regulation in fungi

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

Natural history and evolutionary principles of gene duplication in fungi

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

Fine-structure analysis of ribosomal protein gene transcription

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

An HMG protein, Hmo1, associates with promoters of many ribosomal protein genes and throughout the rRNA gene locus in Saccharomyces cerevisiae.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

Comparative gene expression analysis by differential clustering approach: application to the Candida albicans transcription program

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

Gene duplication and the origin of novel proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

Conservation and evolvability in regulatory networks: the evolution of ribosomal regulation in yeast

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

TOR regulates ribosomal protein gene expression via PKA and the Forkhead transcription factor FHL1.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

Growth-regulated recruitment of the essential yeast ribosomal protein gene activator Ifh1.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

The transcription factor Ifh1 is a key regulator of yeast ribosomal protein genes.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

Sfp1 is a stress- and nutrient-sensitive regulator of ribosomal protein gene expression

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

Genome evolution in yeasts

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

The Ashbya gossypii Genome as a Tool for Mapping the Ancient Saccharomyces cerevisiae Genome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

Stress-induced gene expression in Candida albicans: absence of a general stress response.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

Systematic identification of pathways that couple cell growth and division in yeast

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

Remodeling of yeast genome expression in response to environmental changes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

Genomic expression programs in the response of yeast cells to environmental changes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

The evolutionary fate and consequences of duplicate genes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

The economics of ribosome biosynthesis in yeast

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

Preservation of duplicate genes by complementary, degenerative mutations

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2851827

Evolution of eukaryotic transcription circuits

4 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0911905107

Co-evolution of transcription factors and their targets depends on mode of regulation

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0911905107

CIS: compound importance sampling method for protein-DNA binding site p-value estimation

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0911905107

21 January 2018

Identifiers

DOI

10.1073/PNAS.0911905107

1 reference

29 July 2017

0 references

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29 July 2017

1 reference